PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10872_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 337aa    MW: 38193.6 Da    PI: 7.6205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10872_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.24e-08138159223
                                 EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                  C++CgksF+r  nL+ H+r H
  Cotton_A_10872_BGI-A2_v1.0 138 FCEICGKSFKRDANLRMHMRAH 159
                                 6*******************99 PP
2zf-C2H211.40.00099226249123
                                 EEETTTT.EEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                 y+C+ C+ ksFs   +Lk+H++++
  Cotton_A_10872_BGI-A2_v1.0 226 YRCNRCHkKSFSILVDLKVHLKNC 249
                                 9********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.32E-7133160No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6134159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.445137164IPR007087Zinc finger, C2H2
SMARTSM003556.7E-4137159IPR015880Zinc finger, C2H2-like
PfamPF128743.2E-4138157No hitNo description
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SMARTSM0035545188221IPR015880Zinc finger, C2H2-like
SMARTSM00355120226247IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSIPAEAFRI SSEYPGNGGP SLQQLDPIAL AADLRVPLQN LSTVKRRMDS LQDFLCLSVN  60
TNTLISKDQM DLVSSEITDA VHQIITNSAA LLSCARKTHC LNSNPTPELK PEFEDSDKGE  120
SDVIEVDAVE LLSEHLHFCE ICGKSFKRDA NLRMHMRAHG DQYKTPEALA KKSENNSDVK  180
TPGRKTRFSC PYEGCNRNKK HHKFRSLKSV ICVRNHFKRS HCPKMYRCNR CHKKSFSILV  240
DLKVHLKNCG GGEEIKKWKC SCGNGFSRKD KLFRHISLFE GHMPAMVAEE DQKLKGIVVM  300
EEDEQKKACL EDGLFDDLLN GFDSLENYCL QDVLESW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635746.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1U8JCH70.0A0A1U8JCH7_GOSHI; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGGorai.007G060600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16077813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.25e-70C2H2 family protein