PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10855_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 404aa    MW: 45774.9 Da    PI: 10.5023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10855_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10243288454
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 +h+++Er RR+ri + f+ Lr++lP++      K++Ka++L ++v+ +++L
  Cotton_A_10855_BGI-A2_v1.0 243 KHKMAERHRRKRISQQFDMLRTILPNL-----IKMDKASVLGETVRQLREL 288
                                 6*************************9.....6************988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.348239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-8242293No hitNo description
SuperFamilySSF474591.03E-12243298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-8243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12243297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.9E-4328376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGFDQKKVVK RGKNGKNERK KGPGETGNVK GTFWTACSYC YYKFEYEKKY EECSLRCRNC  60
RKGFHAVAVA PPSESLLAKY SSGNSSMGDK KETRRRGKGK RHDVVEISDS DDEKKELGVK  120
IEANKVKAEG FNNSEGSVVM KRLKSVARNT KKIAGRGIKI KKVENGVADG CNEDEVEVVD  180
DIFVVLLEEN LSSPMVRLKQ LEQDIQQHLR RYRDSISTID FSFKSLKKVT KPKAEANIAN  240
ALKHKMAERH RRKRISQQFD MLRTILPNLI KMDKASVLGE TVRQLRELKN RVKEMKGASN  300
GSLECVLPGD LNSLSFGFSE KDGNLVKATF SCDDRPELIA DLTREIRKVN GTVVRAEMVF  360
IGGRNKSVLW IKGFSGNERM GMLKRALKMA IDIPKKNWKP RFNI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635749.10.0PREDICTED: uncharacterized protein At4g38062-like
TrEMBLA0A1U8ISV91e-149A0A1U8ISV9_GOSHI; transcription factor bHLH131-like
TrEMBLA0A2P5XWZ21e-149A0A2P5XWZ2_GOSBA; Uncharacterized protein
STRINGGorai.007G059100.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-29bHLH family protein