PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10800_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 112aa    MW: 13016.1 Da    PI: 8.6533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10800_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.4e-1215951489
                                T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                          B3 14 grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
                                +rl+lp +++ +    +g++e+++tl+++d     W+++++  ++  +r  +++ W +Fv++++L++gD+v F+ d++  +
  Cotton_A_10800_BGI-A2_v1.0 15 RRLILPIDCLPALprfEGSHENGITLQVMDDVEILWNFRCKKrNGAVDRLAIETDWIQFVNSKKLRSGDIVAFYKDDDrVS 95
                                469999999888888988999*******************6534444459************************7644333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-13393IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-10392No hitNo description
SMARTSM010190.00974102IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-1010101IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-91597IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MQLFARALTS IEVERRLILP IDCLPALPRF EGSHENGITL QVMDDVEILW NFRCKKRNGA  60
VDRLAIETDW IQFVNSKKLR SGDIVAFYKD DDRVSGTLCK IEVKRRTCIY NK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435299.13e-74PREDICTED: auxin response factor 8-like
TrEMBLA0A2P5YRH03e-76A0A2P5YRH0_GOSBA; Uncharacterized protein
STRINGGorai.008G027000.14e-45(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2822423