PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10566_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 144aa    MW: 17111.8 Da    PI: 8.9874
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10566_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS53.25.8e-17282253333
                        GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                                 F++rf+eal ++s+ fd+l + + r+  +r  vE +++++ i+n+va+eg+err r  ++  Wr+ + + G++++  + ++
  Cotton_A_10566_BGI-A2_v1.0   2 FANRFVEALFFFSVYFDCLVTCMKRNCVNREIVESVYFAEGIRNMVAAEGEERRVRYVKFFVWRAFFVRYGMEEILHTRYE 82 
                                 99**********************************************************************998766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.6141103IPR005202Transcription factor GRAS
PfamPF035142.0E-14282IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MFANRFVEAL FFFSVYFDCL VTCMKRNCVN REIVESVYFA EGIRNMVAAE GEERRVRYVK  60
FFVWRAFFVR YGMEEILHTR YEWEMLARQM EGNSGAFCKS YQNCKIKLQQ DFIHAWNPLM  120
IISRSSTSPS TADAIIFRVT RSKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022761269.12e-34DELLA protein RGL1-like
TrEMBLA0A0D2QH251e-42A0A0D2QH25_GOSRA; Uncharacterized protein
TrEMBLA0A2P5W0X61e-42A0A2P5W0X6_GOSBA; Uncharacterized protein
STRINGGorai.006G258800.12e-43(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-10scarecrow-like 3