PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_10427_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 367aa MW: 39972.8 Da PI: 5.6662

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10427_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	134.7	3.3e-42	147	242	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 lfqrl+se+Dei+lL+G++d+ aktg++p+ d+++fy+fvkksi+ +vsk ql++K+rrLKkKfk++v k k+g++p+fsk+h Cotton_A_10427_BGI-A2_v1.0 147 LFQRLFSEDDEIALLKGMLDYSAKTGADPHTDMNGFYDFVKKSIHTNVSKVQLMDKVRRLKKKFKNNVGKNKKGEDPTFSKAH 229 69******************************************************************************* PP DUF573 85 dqkifelskkiWg 97 +qk+felskkiWg Cotton_A_10427_BGI-A2_v1.0 230 EQKAFELSKKIWG 242 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.2E-36	148	242	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MAPKRSNPVE VPAPAFSSEE DEKVTSSEEV EEEGSSTEEE GEEDSKTKPT PLIHNTPPPR 60 KLETANDESD ESGSDSESES DTALPVAIAT KPGSNKPLAS SSKRPGESGL DAKEGKRPKK 120 KVGGEGMATA PVVEEVKRTG EDAKKLLFQR LFSEDDEIAL LKGMLDYSAK TGADPHTDMN 180 GFYDFVKKSI HTNVSKVQLM DKVRRLKKKF KNNVGKNKKG EDPTFSKAHE QKAFELSKKI 240 WGVSGKVESS TAKSNGKAKG NNKAVAALKA ELPSSSDKKT DNAVPIEVDN VVSKSSSSLL 300 DMKFSVSDTE VGVVKVGLDM VDGEKKAALE AKWRKLQMAQ LDLFVERTEF VTEQAKLALK 360 YYKSEDE

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MAPKRSNPVE VPAPAFSSEE DEKVTSSEEV EEEGSSTEEE GEEDSKTKPT PLIHNTPPPR  60
KLETANDESD ESGSDSESES DTALPVAIAT KPGSNKPLAS SSKRPGESGL DAKEGKRPKK  120
KVGGEGMATA PVVEEVKRTG EDAKKLLFQR LFSEDDEIAL LKGMLDYSAK TGADPHTDMN  180
GFYDFVKKSI HTNVSKVQLM DKVRRLKKKF KNNVGKNKKG EDPTFSKAHE QKAFELSKKI  240
WGVSGKVESS TAKSNGKAKG NNKAVAALKA ELPSSSDKKT DNAVPIEVDN VVSKSSSSLL  300
DMKFSVSDTE VGVVKVGLDM VDGEKKAALE AKWRKLQMAQ LDLFVERTEF VTEQAKLALK  360
YYKSEDE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649807.1	0.0	PREDICTED: mediator-associated protein 1-like
TrEMBL	A0A1U8IM32	0.0	A0A1U8IM32_GOSHI; mediator-associated protein 1-like
STRING	Gorai.011G228000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	8e-30	DNA-binding storekeeper protein-related transcriptional regulator