PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10382_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 449aa    MW: 51575.1 Da    PI: 6.1548
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10382_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.72.1e-25121217185
                    trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 
                                 +Wt+++v++Li+a+++++e+   g+           +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ 
  Cotton_A_10382_BGI-A2_v1.0 121 KWTDKMVRLLITAVSYIGEDAAGGCgggmrrkfaviQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGt 203
                                 7*********************998899999999************************************************5 PP

                    trihelix  72 tsessstcpyfdql 85 
                                 +++++++ +++d +
  Cotton_A_10382_BGI-A2_v1.0 204 SCQVVENPALLDVI 217
                                 69999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.3E-23119244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEGNLSQGGM IPGGGSFGGL DLQGSMRVHN HAQNPHSIHQ HHHPNPRQGA SLHASIHEDF  60
PLKMGNIQNS DQIISLMDYN KGERGKSSVS DEDEPSFTEE GVDGHNDGSK GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED AAGGCGGGMR RKFAVIQKKG KWKSVSKVMA ERSYHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPQLQ RSLQLAFKIK DDQENDDAKR QRHDDDDDDD DDDDDMETDD  300
HDEFEENHAS HGDDRGIYRV LGGSAKRSRQ VQVHEDACFH NSSNSQDCNK SSFSYPPPAQ  360
ADINQAPPEN PRAAWLQKQW IESRSLQLEE QKLQIQVEML ELEKQRFKWQ RFSKKRDREL  420
EKMRMENERM KLENERMALE LKRKELDAD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017648828.10.0PREDICTED: uncharacterized protein LOC108489071
RefseqXP_017648829.10.0PREDICTED: uncharacterized protein LOC108489071
TrEMBLA0A1U8NTA20.0A0A1U8NTA2_GOSHI; uncharacterized protein LOC107951620
STRINGGorai.005G079200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-172sequence-specific DNA binding transcription factors