PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_10345_BGI-A2_v1.0
Common NameF383_18138
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 353aa    MW: 38446.7 Da    PI: 7.42
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_10345_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462112491255
                                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Cotton_A_10345_BGI-A2_v1.0 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249
                                 6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-6209253No hitNo description
SuperFamilySSF474594.45E-10209260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-7213255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAGNPDWWSI NNAMRPPSTH HHHQQTASPF FPFPPPQPPP PPAAAAAAAT FFPQLIPTST  60
SSSSSWHDNN NQEVPESWSQ LLLGGLVGEE QATALQHQAS TGNNNVMKQE NYVYGHANED  120
YHHHHHHYQG SKATTNWSMA TASSSPKSCV TTSFNSNMLD FSSNIKADTA TRQHPPLMDP  180
SPECNSCTAS GGALKKTRVQ PSATQSTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE  240
AIGYIRFLQS QIEALSLPYL SSDGSSGNMR QQQQSVQGER NCIFPEDPGQ LLNEKCMKKR  300
KGSPADLQDS NEEPKKNLKS RGLCLVPISC TLQVGSDNGA DYWAPPSLGG GFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272611e-168HQ527261.1 Gossypium herbaceum clone NBRI_D_4733 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622995.10.0PREDICTED: transcription factor bHLH68-like isoform X1
SwissprotQ8S3D11e-85BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0B0NSC70.0A0A0B0NSC7_GOSAR; Transcription factor bHLH68-like protein
STRINGGorai.001G007000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]