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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_10312_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 374aa MW: 41707.5 Da PI: 7.2069 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.9e-08 | 137 | 157 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd+C FaHg Cotton_A_10312_BGI-A2_v1.0 137 ACPDFRK-GNCRKGDSCEFAHG 157 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.08 | 84 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.08 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-6 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-6 | 137 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.798 | 167 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.4 | 167 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MMLGETHRPN PTVHVPPWPD LDDDQTDVVY SPIHYNATDN NLNSNGNPFY LHEALSALQR 60 YLPSNGPDVE LDSEFPGLDS PDSPVDAYSC DHFRMYEFKI RRCARGRSHD WTECPYAHPG 120 EKARRRDPRK YHYSGTACPD FRKGNCRKGD SCEFAHGVFE CWLHPARYRT QPCKDGSGCR 180 RRVCFFAHTP DQLRLVSSTD TYDGSPCGKS LTFWSSPGSG SPPVSPRAES CSSPPVSPMA 240 QSLSRSLGSA SINEMVTSLR NLQLGKVKSW KTQVGCCSPS SPSSFGSPRT AMIRPGFCSL 300 PSTPTRNLTR PGISYPDSWD KVCEEEPVME RVESGRDLRA KMFEKLSKEN SLERVNPDQS 360 SGGPDLNWVS DLVN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016729073.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 49-like | ||||
Swissprot | Q9M0G2 | 1e-147 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1U8MU46 | 0.0 | A0A1U8MU46_GOSHI; zinc finger CCCH domain-containing protein 49-like | ||||
STRING | Gorai.001G009900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-138 | C3H family protein |
Publications ? help Back to Top | |||
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