PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 433aa MW: 48032.9 Da PI: 5.6364

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10271_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	227	281	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl Cotton_A_10271_BGI-A2_v1.0 227 KPRMRWTPELHERFVEAVNKLHGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 281 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.732	224	284	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-18	225	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-25	227	282	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.2E-31	227	282	IPR009057	Homeodomain-like
Pfam	PF00249	8.5E-10	229	280	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-22	318	365	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MTQSEPSKGI GEPYPIAAFP AHKILSIQSE GQSPMAGECS SRLSFPFNSP RSDAKNASSS 60 SSVFCTSLYL SSSSTSETQR QLGNLPFLPH PPTCHQFISS VDSSKSPAVF SEDLNNPYNE 120 GHSEIIMKDF LNLPADASSD GCFYGMHCES DDFGITTEQL ELQFLSDELD IAITDHGENP 180 RLDEIYGTCP PSSAKPTVEL KCNQNTNSVS PTIDGPAMYG AAAAVLKPRM RWTPELHERF 240 VEAVNKLHGP EKATPKGVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE ERKTSSSSEE 300 KKPASSSNES DGKKRGGMHI TEALRMQMEV QKQLHEQLEL QRSLQLRIEE HARYLQKMLE 360 EQQKAGNALV PNPNSELPSR IASETEPCES KTESPTSLPS KYKAPNVEEC KLKSSPKRLR 420 MDEAEAEVEN PEQ

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MTQSEPSKGI GEPYPIAAFP AHKILSIQSE GQSPMAGECS SRLSFPFNSP RSDAKNASSS  60
SSVFCTSLYL SSSSTSETQR QLGNLPFLPH PPTCHQFISS VDSSKSPAVF SEDLNNPYNE  120
GHSEIIMKDF LNLPADASSD GCFYGMHCES DDFGITTEQL ELQFLSDELD IAITDHGENP  180
RLDEIYGTCP PSSAKPTVEL KCNQNTNSVS PTIDGPAMYG AAAAVLKPRM RWTPELHERF  240
VEAVNKLHGP EKATPKGVLK LMNVEGLTIY HVKSHLQKYR LAKYMPEKKE ERKTSSSSEE  300
KKPASSSNES DGKKRGGMHI TEALRMQMEV QKQLHEQLEL QRSLQLRIEE HARYLQKMLE  360
EQQKAGNALV PNPNSELPSR IASETEPCES KTESPTSLPS KYKAPNVEEC KLKSSPKRLR  420
MDEAEAEVEN PEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	227	284	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648855.1	0.0	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	1e-127	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A0B0MQE7	0.0	A0A0B0MQE7_GOSAR; Myb family transcription factor APL
STRING	Gorai.011G001500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-92	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]