PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10225_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 377aa MW: 41384.6 Da PI: 5.583

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10225_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.6e-31	211	269	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Cotton_A_10225_BGI-A2_v1.0 211 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 269 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-31	204	271	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	205	271	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-26	208	271	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	210	270	IPR003657	WRKY domain
Pfam	PF03106	7.4E-26	212	269	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MENYQGDLND IVRASAEPAH FSDTVPQLSS WQQQFPSSDP LSFSSSAMED DHSTNTFGDP 60 FTAIRDPLLL LQELNVVGTG SSSTYFNNSP NSTNDHHHMG GFDDMTSPCN IFSRIQISHS 120 SNPLPPCDPP GVAAASTGLG GHKAPAVFPS DMINAKSCLI DNTTVAASVP VQISSPRNLG 180 IKRRKSQGKK VVCIPAPAAA NSRSSGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK 240 GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSQPSKPNA NNTGSKMGSP 300 SDSEPQKTTK ETIKEETEMD DMAKQQLDID EATTVETQQQ QHDQDFFADL DEILFDQQKE 360 NKPMDQFTLF DYTNASF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MENYQGDLND IVRASAEPAH FSDTVPQLSS WQQQFPSSDP LSFSSSAMED DHSTNTFGDP  60
FTAIRDPLLL LQELNVVGTG SSSTYFNNSP NSTNDHHHMG GFDDMTSPCN IFSRIQISHS  120
SNPLPPCDPP GVAAASTGLG GHKAPAVFPS DMINAKSCLI DNTTVAASVP VQISSPRNLG  180
IKRRKSQGKK VVCIPAPAAA NSRSSGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK  240
GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSQPSKPNA NNTGSKMGSP  300
SDSEPQKTTK ETIKEETEMD DMAKQQLDID EATTVETQQQ QHDQDFFADL DEILFDQQKE  360
NKPMDQFTLF DYTNASF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	185	272	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	185	272	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438458	1e-98	KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648620.1	0.0	PREDICTED: probable WRKY transcription factor 14 isoform X2
Swissprot	Q9SA80	3e-96	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A2P5VV32	0.0	A0A2P5VV32_GOSBA; Uncharacterized protein
STRING	Gorai.011G006600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	4e-90	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]