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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_10225_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 377aa MW: 41384.6 Da PI: 5.583 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.1 | 5.6e-31 | 211 | 269 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Cotton_A_10225_BGI-A2_v1.0 211 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 269 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-31 | 204 | 271 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 205 | 271 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-26 | 208 | 271 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 210 | 270 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-26 | 212 | 269 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MENYQGDLND IVRASAEPAH FSDTVPQLSS WQQQFPSSDP LSFSSSAMED DHSTNTFGDP 60 FTAIRDPLLL LQELNVVGTG SSSTYFNNSP NSTNDHHHMG GFDDMTSPCN IFSRIQISHS 120 SNPLPPCDPP GVAAASTGLG GHKAPAVFPS DMINAKSCLI DNTTVAASVP VQISSPRNLG 180 IKRRKSQGKK VVCIPAPAAA NSRSSGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK 240 GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS TRSQPSKPNA NNTGSKMGSP 300 SDSEPQKTTK ETIKEETEMD DMAKQQLDID EATTVETQQQ QHDQDFFADL DEILFDQQKE 360 NKPMDQFTLF DYTNASF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-25 | 185 | 272 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-25 | 185 | 272 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438458 | 1e-98 | KM438458.1 Gossypium aridum WRKY27 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648620.1 | 0.0 | PREDICTED: probable WRKY transcription factor 14 isoform X2 | ||||
Swissprot | Q9SA80 | 3e-96 | WRK14_ARATH; Probable WRKY transcription factor 14 | ||||
TrEMBL | A0A2P5VV32 | 0.0 | A0A2P5VV32_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G006600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30650.1 | 4e-90 | WRKY DNA-binding protein 14 |
Publications ? help Back to Top | |||
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