PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_10140_BGI-A2_v1.0

Common Name

F383_02685

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 238aa MW: 26273.1 Da PI: 8.6883

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_10140_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.3e-14	64	110	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRRdriNs + Lr+l+Pk+ K++Ka+ L A+e +k+L Cotton_A_10140_BGI-A2_v1.0 64 KSHSEAEKRRRDRINSQLTALRKLIPKS-----NKMDKAALLGSAIEQVKDL 110 79***********************7.....5***********99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.555	61	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.37E-14	64	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-15	64	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.84E-11	64	113	No hit	No description
Pfam	PF00010	1.2E-11	64	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-12	67	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.8E-5	142	204	No hit	No description
SuperFamily	SSF55021	8.88E-6	142	208	No hit	No description
PROSITE profile	PS51671	9.055	144	220	IPR002912	ACT domain
CDD	cd04873	1.79E-7	145	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MENCYPLSLL EPPNCDGFNA AAISNEPPFM VPWPMEPLFS ASSSVRCHGF TSPAIPDKAT 60 VASKSHSEAE KRRRDRINSQ LTALRKLIPK SNKMDKAALL GSAIEQVKDL KRKATEIGKA 120 FAIPSETDEV SVDYNVPEDK TFIRVSICCD DRPEVFSELI RVLKGLRLSI VEAEISSVGG 180 RTKSNLILCN ESDNREGVSS TLKQSLNIVV NKINALSSDE SKSSCRIRSK RQRLFLSS

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017620494.1	1e-173	PREDICTED: transcription factor bHLH51
Swissprot	Q9XEF0	1e-54	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A0B0P528	1e-171	A0A0B0P528_GOSAR; Transcription factor bHLH51-like protein
STRING	Gorai.011G292100.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	5e-57	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]