PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09980_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 131aa    MW: 15507.9 Da    PI: 9.543
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09980_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS55.41.2e-17269205274
                        GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                                 n+v+ql+++l ++   +   +++L l++s++P+vv+++ qea+hn  s+ +r++++l+yysa+fds++ +
  Cotton_A_09980_BGI-A2_v1.0   2 NCVFQLQKTLYDRDGGA--LRDFLGLIRSTNPTVVTMAKQEAEHNVLSLEARVTNSLRYYSAIFDSIDYS 69 
                                 9*******996554443..478********************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.2E-15269IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MNCVFQLQKT LYDRDGGALR DFLGLIRSTN PTVVTMAKQE AEHNVLSLEA RVTNSLRYYS  60
AIFDSIDYSF RCIVRFERHG SFEKWRKLME QGGFKCMGIN ETGDFYRVKC CRKRTLIRFG  120
LWWLDPFIQK Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021293127.14e-46scarecrow-like protein 28
SwissprotQ9CAN31e-29SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2P5VU982e-48A0A2P5VU98_GOSBA; Uncharacterized protein
STRINGEOY246322e-44(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.16e-32GRAS family protein