 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_09802_BGI-A2_v1.0 |
| Common Name | F383_01656 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 243aa MW: 26721.1 Da PI: 9.2773 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_09802_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.4 | 2.8e-19 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
Cotton_A_09802_BGI-A2_v1.0 93 RKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTK 147
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 126.3 | 1.4e-40 | 93 | 182 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
+kk+rlskeq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++y++l++en+rL+ke
Cotton_A_09802_BGI-A2_v1.0 93 RKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKE 175
69********************************************************************************* PP
HD-ZIP_I/II 84 veeLreel 91
v+eL+ +l
Cotton_A_09802_BGI-A2_v1.0 176 VQELK-AL 182
****9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MGVDDSCNTG LVLSLGFSST LQTPSKPYNK NPSFLKLEPN DEPSLTLALS GVAGGVKPAS 60
PLSGVSSFSS GNKPKREREL SSDEDEEGTV NGRKKLRLSK EQSSLLEESF KQHSTLNPKQ 120
KQALARQLNL KPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CYETLTDENR RLQKEVQELK 180
ALKLAAHPFH MQAATLTICP SCERTAAAGG VSDGDGNSKN LFSLASKTHH FYNNPLTNPS 240
AAC
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 141 | 149 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX583476 | 2e-52 | JX583476.1 Gossypium hirsutum clone NBRI_GE16526 microsatellite sequence. |
