PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09677_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 523aa    MW: 58260.6 Da    PI: 6.4079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09677_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.73.8e-1131425221374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sse 76 
                                 lv+lL++cAeav+ +d++ a+alL++l+++a   g+++qR+a++f+++La rla+ ++   +  +++  + +n       s++
  Cotton_A_09677_BGI-A2_v1.0 142 LVQLLIACAEAVACRDKSHASALLSELRTNALVFGSSFQRVASCFVQGLADRLASVQPPGTAVGRVQLPPVMNimdimsdSDK 224
                                 689****************************************************7777666667777777777778888889 PP

                        GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLa.sRp.egpp...slRiTgvgsp 150
                                 +  a++l +e++P +kf+h++aN aIlea+ege+ vH++D++++    qG QW  L+q+La +R  +g+p   +lRiT+vg  
  Cotton_A_09677_BGI-A2_v1.0 225 KQEAFRLVYEICPHIKFGHFVANLAILEAFEGESLVHVVDLGMTlglpQGHQWRHLIQSLAaTRGgAGKPhciRLRITAVGL- 306
                                 99999***********************************98764444889**********5555744553667********. PP

                        GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                                      ++   +g+ L+ +A+++g+++efn+ v+++le+l++e+++v+ +E+l+Vn++lqlh +++es    +   +vL+++ +
  Cotton_A_09677_BGI-A2_v1.0 307 ---CVDRFDVIGKDLKTYAKSMGINLEFNI-VESNLENLKPENIKVSDDEVLVVNSILQLHCVVKESRGALN---SVLQMIHE 382
                                 ...**************************9.7********************************88877777...8******* PP

                        GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                                 lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+v+cega+r+erhe++ +Wr
  Cotton_A_09677_BGI-A2_v1.0 383 LSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIVSCEGADRVERHERVDQWR 465
                                 *********************************************************************************** PP

                        GRAS 317 erleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +r+++aGF++ pl+   ++qak  l + k  +gy+v e++g+lvlgW+ +p+v+vS+W+
  Cotton_A_09677_BGI-A2_v1.0 466 RRMSRAGFQATPLR--LMSQAKQWLGNNKvCEGYTVVEDKGCLVLGWNAKPIVAVSCWK 522
                                 ************95..89***********9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.883116503IPR005202Transcription factor GRAS
PfamPF035141.3E-110142522IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSHGFLPNEF QNSDKIDEVI SLDLTLSAMG MTFCSHRFMP LIVDNDDNNW SRRFFEEENR  60
DNKRLKGTIN GGNSDSGMSR NGSNGSLSSL SSLHFRDHIL TYSKRYLAAE AVEEAAAAAA  120
AMAAGYEENG VEEDETAYGM RLVQLLIACA EAVACRDKSH ASALLSELRT NALVFGSSFQ  180
RVASCFVQGL ADRLASVQPP GTAVGRVQLP PVMNIMDIMS DSDKKQEAFR LVYEICPHIK  240
FGHFVANLAI LEAFEGESLV HVVDLGMTLG LPQGHQWRHL IQSLAATRGG AGKPHCIRLR  300
ITAVGLCVDR FDVIGKDLKT YAKSMGINLE FNIVESNLEN LKPENIKVSD DEVLVVNSIL  360
QLHCVVKESR GALNSVLQMI HELSPKLLVL VEQDSSHNGP FFLGRFMEAL HYYSAIFDSL  420
DAMLPKYDTR RAKMEQFYFA EEIKNIVSCE GADRVERHER VDQWRRRMSR AGFQATPLRL  480
MSQAKQWLGN NKVCEGYTVV EDKGCLVLGW NAKPIVAVSC WKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5614952126378Protein SCARECROW
5b3h_A4e-5614952125377Protein SCARECROW
5b3h_D4e-5614952125377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610357.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A0D2T5560.0A0A0D2T556_GOSRA; Uncharacterized protein
STRINGGorai.006G270800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16018814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-77RGA-like 1