PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09661_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 532aa    MW: 58441.3 Da    PI: 8.0058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09661_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-14275325255
                                 HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 r +h++ E+rRR++iN++ f++L+ ++P++    ++K +Ka+ L +++eYI+ Lq
  Cotton_A_09661_BGI-A2_v1.0 275 RSKHSATEQRRRSKINDRqFQRLKGIIPNS----DQKRDKASFLLEVIEYIQFLQ 325
                                 889*************9768*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.0E-21270347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15272346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.519273324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-13275329No hitNo description
PfamPF000104.6E-12275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10279330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGQLATTYLH MLCEVVNYIA YLNCNEEARQ RRLYDYEPIG GTLAVFVEIV LVQIKADGYR  60
KTHDFLQLEA LGKAIAKEET TAEEAMAEKP LPPPPPAPPP RSAEHVLPGG IGTYSISHIS  120
SRAEGALFTV ARRSISERND ETSNCSSYTG SGFTLWEESA AKKGKTGKEN TGETPAVREA  180
AGKERQWATS SLERPSQSSS TNNHRNSFSS LPSSRPSSKQ KSFMEMMKSA QYNDFEEDEN  240
FNLKKESSTT TRSKGELRVK VDGKRAADQK ANTPRSKHSA TEQRRRSKIN DRQFQRLKGI  300
IPNSDQKRDK ASFLLEVIEY IQFLQEKVHI YEGAYQGWNH EPSKLMPWRN NETPTQNHAD  360
QSRAINSVST PSALVFSVAP NIPGTAMNPV DSDMSTATTL RPVDLGPAMM NKTMPFAVSP  420
QPNSITSAQS TPTLPSDAET NGALPIKKLK EQELTVEGGT ISISSVYSQG LLNTLTQALQ  480
ASGVDLSHAS LSVQIELGKQ SSTGYTAPTS TLKGQGDSIH NSRDDTFKSW IC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575533e-32KP257553.1 Salvia miltiorrhiza clone 121 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611922.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A0D2S2Z80.0A0A0D2S2Z8_GOSRA; Uncharacterized protein
STRINGGorai.006G269200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.52e-77bHLH family protein