PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_09660_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 271aa MW: 30200 Da PI: 4.6622

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09660_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	84	1.6e-26	28	69	2	43
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkG 43 +++al+cprCds ntkfCyynny+lsqPryfCk+CrryWtk Cotton_A_09660_BGI-A2_v1.0 28 HHQALECPRCDSLNTKFCYYNNYNLSQPRYFCKSCRRYWTKV 69 67999***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-17	28	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.9E-23	30	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	21.539	32	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MQDTHSIGGG RIFSGGGGFG YGRLRPQHHQ ALECPRCDSL NTKFCYYNNY NLSQPRYFCK 60 SCRRYWTKVA AAAVQPQLLQ QQHCNQLKEN THSCSKSYSL TADNFNVPAT NNNNISGGST 120 VEAAPAITSH SSLINASDSK FYENPNDLGF TEMESFTSLI TWSNNETVPF GFGNVFSEQG 180 QWQQLQQQPK TVSTGVEELT MGLLDPTVDI ELANLDNRSK GEDYGGFRPL DWEGSGDQGT 240 TLLDLSNGSF DQTYWNQNQW ADQDPPTLYL P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	16	GGRIFSGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609300.1	1e-161	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A2P5VPF2	1e-163	A0A2P5VPF2_GOSBA; Uncharacterized protein
STRING	Gorai.006G268800.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	7e-23	OBF binding protein 4