PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09582_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 294aa    MW: 33584.5 Da    PI: 8.8597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09582_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05134153120
                                 EEETTTTEEESSHHHHHHHH CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                 + C++C+k+F+r  n++ H+
  Cotton_A_09582_BGI-A2_v1.0 134 FACSICSKTFNRYNNMQMHM 153
                                 78*****************9 PP
2zf-C2H216.32.7e-05218240123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 + C +Cgk+F  k + ++H +++
  Cotton_A_09582_BGI-A2_v1.0 218 FMCRKCGKTFAVKGDWRTHEKNC 240
                                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-6102157No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5134153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741134161IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
SMARTSM00355190181213IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.31E-6204238No hitNo description
Gene3DG3DSA:3.30.160.607.0E-6214238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704218238IPR007087Zinc finger, C2H2
SMARTSM0035535218238IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKLPLISFQQ QQQQQQYHDF QKHQVGEETI QCLPLLSRFT ENKPLKEEAL QKVMSVGDVK  60
EEKIEKVTVS LHIGLPNSSA AAAAEGDDNI PVVDHKILKE EEPMKKTFHG CSFNTMSRFW  120
IPTPAQILVG PMQFACSICS KTFNRYNNMQ MHMWGHGSEY RKGPDSLKGS QPAAMLRLPC  180
YCCAQGCKNN INHPRAKPLK DFRTLQTHYK RKHGAKPFMC RKCGKTFAVK GDWRTHEKNC  240
GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS PHPSLEGFED DKECITGSED EFAH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645197.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-121ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0D2N8M10.0A0A0D2N8M1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NYH10.0A0A1U8NYH1_GOSHI; zinc finger protein WIP3-like
STRINGGorai.001G121700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-123WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]