PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09528_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 290aa    MW: 31250 Da    PI: 7.7945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09528_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00046123145123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 y+C+ C++sF++   L  H  +H
  Cotton_A_09528_BGI-A2_v1.0 123 YECKTCNRSFPSFQALGGHRASH 145
                                 99**********99999998887 PP
2zf-C2H213.70.00018201223123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++Cg  Fs+   L  H+r+H
  Cotton_A_09528_BGI-A2_v1.0 201 HECSICGSEFSSGQALGGHMRRH 223
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.86E-9122145No hitNo description
PfamPF139122.0E-13122147IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72123150IPR007087Zinc finger, C2H2
SMARTSM003550.06123145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4196223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.86E-9196223No hitNo description
PROSITE profilePS5015710.014201228IPR007087Zinc finger, C2H2
SMARTSM003550.02201223IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-11201225IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDVQAHQEEF VGSNDHQALV IKGKRTKRQR PSSPFGVTVT CSSSSASIGG GGVAEEYNSI  60
SSPTTSGEIH ESTEEEEDMA NCLIMLAQSD GPRKRMDEGK FKVGSRKLSE IATTTNKAGF  120
FVYECKTCNR SFPSFQALGG HRASHKKPKA TMAEDKKPLV LAVKDDKHVD QELQSETPLL  180
ALQVSNNNSK GCQVNKGNKI HECSICGSEF SSGQALGGHM RRHRAAAATT ASNQVVVSVG  240
NGDGIKPRNI LSLDLNLPAP EDDLRDSKFQ FGAPKQAIVF STPALVDCHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642254.10.0PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X43e-69ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A1U8K7B80.0A0A1U8K7B8_GOSHI; zinc finger protein ZAT5-like
TrEMBLA0A2P5WU240.0A0A2P5WU24_GOSBA; Uncharacterized protein
STRINGGorai.001G117100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-62C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]