PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09390_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 366aa    MW: 40996.9 Da    PI: 7.405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09390_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07135155526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                  C++f++ G C+ G+ C FaHg
  Cotton_A_09390_BGI-A2_v1.0 135 ACPDFRK-GNCRKGEACEFAHG 155
                                 7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-5130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535131157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5134157IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5135155IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643165189IPR000571Zinc finger, CCCH-type
SMARTSM0035614165188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MMLGETHRFN PTVHVPPWPS FDDDQTAEVH SPLNYNAPCN YFNNNSNPFY LQEALGMLRR  60
YLPSNELDIE SDSELSFHPD SPVDACSCDH FRMFEFKVRR CGRGRAHDWT DCPYAHPGEK  120
ARRRDPRKYH YSGTACPDFR KGNCRKGEAC EFAHGVFECW LHPARYRTQP CKDGTSCRRR  180
VCFFAHTPEQ LRVVSSVDSN DGSPSSAKTL SFSGSPPMSP RAEPSPPISP MAQSLSRSLA  240
SASINEAVAS MRNLQLGKVK SLPSSWNVQV GCCSPAFGSP RGAVIRPSFC SLPSTPTQNL  300
TRPAIGHLDF WDEACEEEPQ MERVESGRDL RAKMFEKLCK ENSLERVNPT QSSGGPNVDW  360
VSDLVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643768.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like isoform X1
SwissprotQ9M0G21e-141C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1U8PFR10.0A0A1U8PFR1_GOSHI; zinc finger CCCH domain-containing protein 20-like isoform X1
STRINGGorai.009G029300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-129C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]