PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_09305_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 326aa MW: 34028.4 Da PI: 6.0913

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09305_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.6e-10	176	220	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + v+Y+k L Cotton_A_09305_BGI-A2_v1.0 176 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 220 99*********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.42E-16	169	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.526	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-16	173	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.84E-11	175	225	No hit	No description
Pfam	PF00010	1.2E-7	176	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-12	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAGNQQQEAG LGDDFFEQIL AVPPGYGGGG GGGATLPMGL QLGSSGGATG ASGGDSGGGG 60 FRGIGMMPLG LNLEHGFLRH EDGVVVDNNN NNASCSAASA VSGISERDSM HMVSLFPPFG 120 QMQTQQIRAS PPPQPPPQLH QPFHSQPTSG PVAAAPHPPA VRPRVRARRG QATDPHSIAE 180 RLRRERIAER MKALQELVPS CNKTDRAAML DEIVDYVKFL RLQVKVLSMS RLGAAGAVAQ 240 LVADVPLLSV EGDGAGGGTQ PAWEKWSNDG TEQQVAKLME EDIGAAMQFL QSKALCIVPI 300 SLASAIFPAH QPDAPTIVKP ESNTPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	185	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ525196	1e-104	HQ525196.1 Gossypium herbaceum clone NBRI_D2_1401 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017627357.1	0.0	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	1e-84	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A0D2SS58	1e-168	A0A0D2SS58_GOSRA; Uncharacterized protein
STRING	Gorai.007G277200.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	2e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]