PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 180aa MW: 20656 Da PI: 4.4309

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09239_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.5	6.2e-05	109	150	11	45
HHHHHHHHHH.....HSSS--HHHHHHHHHHC..TS-HHHHH CS Homeobox 11 qleeLeelFe.....knrypsaeereeLAkkl..gLterqVk 45 eeL ++F+ +n ++sa+++e++A++l +Lte+ ++ Cotton_A_09239_BGI-A2_v1.0 109 TKEELTKAFQiidqdNNGKISAQDIERIANELgvKLTEKEIQ 150 6799***99998789*************9999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47473	1.01E-48	29	175	IPR011992	EF-hand domain pair
Gene3D	G3DSA:1.10.238.10	1.7E-32	34	121	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	16.857	35	70	IPR002048	EF-hand domain
Pfam	PF13499	3.7E-17	38	100	IPR002048	EF-hand domain
SMART	SM00054	3.4E-8	39	67	IPR002048	EF-hand domain
CDD	cd00051	5.92E-21	39	101	No hit	No description
PROSITE pattern	PS00018	0	48	60	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	15.294	71	106	IPR002048	EF-hand domain
SMART	SM00054	1.3E-7	75	103	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	84	96	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	13.509	108	143	IPR002048	EF-hand domain
Pfam	PF13499	1.7E-15	111	174	IPR002048	EF-hand domain
SMART	SM00054	0.0038	112	140	IPR002048	EF-hand domain
CDD	cd00051	4.86E-17	112	174	No hit	No description
PROSITE pattern	PS00018	0	121	133	IPR018247	EF-Hand 1, calcium-binding site
Gene3D	G3DSA:1.10.238.10	1.3E-22	122	176	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	13.844	144	179	IPR002048	EF-hand domain
SMART	SM00054	6.5E-7	148	176	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	157	169	IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005509	Molecular Function	calcium ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MCSNKCFDHF HQSSIYKDTT GKDKHKGRHH GLSQQKKQEI KEAFELFDTD GSGTIDAKEL 60 NVAMRALGFE MTEEQIEQMI ADVDKDGSGA IDFDEFVYMM TAKIGERDTK EELTKAFQII 120 DQDNNGKISA QDIERIANEL GVKLTEKEIQ DMIEEADKDN DGEVNMDEFM RMMKRTTYGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3qrx_A	7e-66	22	178	13	168	Centrin
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a fundamental role in microtubule-organizing center structure and function.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016690598.1	1e-127	PREDICTED: caltractin-like
Swissprot	P41210	6e-95	CATR_ATRNU; Caltractin
TrEMBL	A0A1U8JPF6	1e-125	A0A1U8JPF6_GOSHI; caltractin-like
STRING	Gorai.003G023300.1	1e-115	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11230	2	2

Publications ? help Back to Top
Zhu JK,Bressan RA,Hasegawa PM An Atriplex nummularia cDNA with Sequence Relatedness to the Algal Caltractin Gene. Plant Physiol., 1992. 99(4): p. 1734-5 [PMID:16669106]