PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09092_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 438aa    MW: 48075.1 Da    PI: 6.139
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09092_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073674002154
                                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  Cotton_A_09092_BGI-A2_v1.0 367 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 400
                                 469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.9E-19164208IPR005540KNOX1
PfamPF037901.9E-17166207IPR005540KNOX1
SMARTSM012564.8E-28220275IPR005541KNOX2
PfamPF037917.4E-20224274IPR005541KNOX2
PROSITE profilePS5007111.791341404IPR001356Homeobox domain
SuperFamilySSF466896.84E-16343407IPR009057Homeodomain-like
SMARTSM003895.1E-11343408IPR001356Homeobox domain
CDDcd000861.49E-11344405No hitNo description
Gene3DG3DSA:1.10.10.603.0E-25348405IPR009057Homeodomain-like
PfamPF059201.2E-17361400IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAFHHNNHLS DHHQDLPLHH LTEHHHQQAS QLSETNGPNW LNTALLRSQQ PQPAQPHSSQ  60
FAEPNFLNLH TTRAASDSTT GSQAPNQWLS RTSSSLLHRN HSDVIDDVGA AGEAARGGGG  120
ESMVAMESGG SGNNNGIMNN NKSEGVVVES GGGGGDGVVN WQNARYKADI LAHPLCEQLL  180
SAHVACLRVA TPVDQLPRID AQLAQSQHVV AKYSSLSGGS QGVVADDKEL DQFLTHYVLL  240
LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDD DDQVDSDGNL  300
FDGSLEGPDS MGFGPLILTD SEKSLMERGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKA  360
WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR NWNSNPSTST VSKSKRKSIL  420
TSVFERSNAG ENNGDRFM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3888761e-80FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667989.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X1
RefseqXP_016673942.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1U8HX980.0A0A1U8HX98_GOSHI; homeobox protein knotted-1-like 4 isoform X1
TrEMBLA0A1U8I6Y10.0A0A1U8I6Y1_GOSHI; homeobox protein knotted-1-like 3 isoform X1
STRINGGorai.013G213900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-162KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]