PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08842_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 132aa    MW: 15646.2 Da    PI: 10.1635
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08842_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-27959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifs+tgk+  y++
  Cotton_A_08842_BGI-A2_v1.0  9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTTGKMCQYCT 59
                                79***********************************************96 PP
2K-box47.29.5e-17691241671
                       K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                                 + +q+ + L+ke++ Lq + R++ Ged++s+ ++eL qLe++Le+s+ k+R++K +
  Cotton_A_08842_BGI-A2_v1.0  69 ERYQKTEVLRKETRRLQLSMRRYTGEDMSSIPFEELDQLEHELERSVIKVRERKVH 124
                                 55788899**********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-30279IPR002100Transcription factor, MADS-box
CDDcd002652.92E-38275No hitNo description
PRINTSPR004042.2E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.60267132IPR002487Transcription factor, K-box
PfamPF014862.7E-1370125IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST TGKMCQYCTE  60
GYRMEHIIER YQKTEVLRKE TRRLQLSMRR YTGEDMSSIP FEELDQLEHE LERSVIKVRE  120
RKVHAHHLLN AF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19171169MEF2C
5f28_B6e-19171169MEF2C
5f28_C6e-19171169MEF2C
5f28_D6e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364431e-114HM236443.1 Gossypium hirsutum MADS27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313794.19e-77protein TRANSPARENT TESTA 16-like
RefseqXP_012459843.19e-77PREDICTED: protein TRANSPARENT TESTA 16-like
RefseqXP_016679920.19e-77PREDICTED: protein TRANSPARENT TESTA 16-like
RefseqXP_017613005.11e-76PREDICTED: protein TRANSPARENT TESTA 16-like
SwissprotQ9ATE59e-47FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A0D2V6241e-75A0A0D2V624_GOSRA; Uncharacterized protein
TrEMBLA0A0D2VZ129e-76A0A0D2VZ12_GOSRA; Uncharacterized protein
STRINGGorai.012G134200.12e-76(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.32e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]