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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_08842_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MIKC_MADS |
Protein Properties |
Length: 132aa MW: 15646.2 Da PI: 10.1635 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_08842_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 85.6 | 2.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifs+tgk+ y++
Cotton_A_08842_BGI-A2_v1.0 9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTTGKMCQYCT 59
79***********************************************96 PP
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2 | K-box | 47.2 | 9.5e-17 | 69 | 124 | 16 | 71 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71
+ +q+ + L+ke++ Lq + R++ Ged++s+ ++eL qLe++Le+s+ k+R++K +
Cotton_A_08842_BGI-A2_v1.0 69 ERYQKTEVLRKETRRLQLSMRRYTGEDMSSIPFEELDQLEHELERSVIKVRERKVH 124
55788899**********************************************76 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 6.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.081 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-30 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.92E-38 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 2.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.602 | 67 | 132 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.7E-13 | 70 | 125 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 132 aa
Download sequence Send
to blast |
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST TGKMCQYCTE 60 GYRMEHIIER YQKTEVLRKE TRRLQLSMRR YTGEDMSSIP FEELDQLEHE LERSVIKVRE 120 RKVHAHHLLN AF
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |