PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_08669_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 437aa MW: 47428.6 Da PI: 6.1787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08669_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.3	8.6e-16	149	195	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Cotton_A_08669_BGI-A2_v1.0 149 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 195 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-19	142	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.32E-17	148	199	No hit	No description
Pfam	PF00010	3.0E-13	149	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-18	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-17	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MADLYGGAPY SNPETEEIST ILNQLLHNSS SSSSSSSSCM QFKGKNIHSF PSQVPGISTP 60 AANSGSGMGI PVMDRYRLGG LAVRIESEPG VNISDPETYF GANVKDSADN ALSSACDFSY 120 DSEVPDASEV PSNQERPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK 180 ASMLDEAIEY LKQLQLQVQV SAIFCFCHFC SPILVCYNLQ CRFQLLVLII TYGKTKPIGP 240 HIKLPGTLKK IYVDLIKDPA ILAFNNVMSL SEFENVYYIY VEEAGTVLYT ITLANLICFH 300 GCLQMLSMRN GLSLYPMCLP GVPQSMQMPP TGLGYDEGHG FFSPNIGAGT FSSNEERSMN 360 TPFNLSNPCT ISNLPVAAPS VANVSNLEAS IGFESPAGAH YGSFTHSTSS KEICKEGRSQ 420 IELEMNHGGN STSSGVS

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MADLYGGAPY SNPETEEIST ILNQLLHNSS SSSSSSSSCM QFKGKNIHSF PSQVPGISTP  60
AANSGSGMGI PVMDRYRLGG LAVRIESEPG VNISDPETYF GANVKDSADN ALSSACDFSY  120
DSEVPDASEV PSNQERPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK  180
ASMLDEAIEY LKQLQLQVQV SAIFCFCHFC SPILVCYNLQ CRFQLLVLII TYGKTKPIGP  240
HIKLPGTLKK IYVDLIKDPA ILAFNNVMSL SEFENVYYIY VEEAGTVLYT ITLANLICFH  300
GCLQMLSMRN GLSLYPMCLP GVPQSMQMPP TGLGYDEGHG FFSPNIGAGT FSSNEERSMN  360
TPFNLSNPCT ISNLPVAAPS VANVSNLEAS IGFESPAGAH YGSFTHSTSS KEICKEGRSQ  420
IELEMNHGGN STSSGVS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603267.1	1e-122	PREDICTED: transcription factor SPATULA-like isoform X2
TrEMBL	A0A2P5S066	1e-162	A0A2P5S066_GOSBA; Uncharacterized protein
STRING	Gorai.009G213800.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4199	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	3e-27	bHLH family protein