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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_08661_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
HSF |
Protein Properties |
Length: 407aa MW: 45388.1 Da PI: 7.7037 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_08661_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 114.4 | 7.3e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++
Cotton_A_08661_BGI-A2_v1.0 25 FLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANE 98
9*****************************************************************99.........****** PP
XXXXXXXXXXXXXXXXXXX CS
HSF_DNA-bind 85 sFkkgkkellekikrkkse 103
Fkkg+k+ll++i+r+k++
Cotton_A_08661_BGI-A2_v1.0 99 FFKKGEKHLLCEIHRRKTA 117
****************986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008356 | Biological Process | asymmetric cell division |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ 120 VGINHHHHHH HPHSPLVNAP SFFPFPSRVS ISPADSDEQA NWCDSPPLSS PRGGTGVSVA 180 GGGGGGGYNS SVTALSEDNE RLRKSNNLLM SELAHMKKLY NDIIYFVQNH VKPVTPSNSY 240 SPSLLLYGPP SSVAAAPVVN TTTTNSSFLQ KPSNQLLGHY PNSQKPRVQV LNSPTATSQS 300 SLTILEEPCS NSCKTKLFGV PLQSKKRLHP EYGATNMETN KARLVLEKDD LRLNLMPPTF 360 TYMLALMQER DIRETVSSVS SEPEKVSGYS CPIDSFSRAF SAYSINE
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 2e-21 | 20 | 117 | 16 | 123 | Heat shock factor protein 1 |
5d5u_B | 2e-21 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 20 | 116 | 25 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |