PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08659_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 267aa    MW: 29413.4 Da    PI: 7.9574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08659_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08176216954
                                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Cotton_A_08659_BGI-A2_v1.0 176 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 216
                                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-13168225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-6177216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-6190221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEIDQLKSAT GDEMKTMMMM MQMQMGKLPE FYGDYNNVVE FPHAELADHA TNSSNTSNYS  60
INGNSMPHFV ENPQVGSPGP FANLPTTTIS FNGSTPVQEP SFSFTPDSAS AGELLLLSSG  120
SNASSTSSQK MNSMAAMREM IFRIAAMQPI HIDPESVKPP KRRNVKISKD PQSVAARHRR  180
ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKTQV QSLERVATSR PAGLGFPVAM  240
SNGSLHPMGK PYQPTQNLQE FGDAWLS
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5247877e-93HQ524787.1 Gossypium herbaceum clone NBRI_A_EYI1BW401CDG5H simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605486.10.0PREDICTED: transcription factor HEC2-like
SwissprotQ9SND48e-48HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2P5WBF30.0A0A2P5WBF3_GOSBA; Uncharacterized protein
STRINGGorai.009G212900.11e-166(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.17e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]