PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08617_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 244aa MW: 27511.6 Da PI: 8.6431

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08617_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1e-18	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++I+r++ gR++k+c++rw + Cotton_A_08617_BGI-A2_v1.0 35 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	52.9	8.5e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ Cotton_A_08617_BGI-A2_v1.0 89 PFSQAEDDTILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 131 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.289	30	85	IPR017930	Myb domain
SuperFamily	SSF46689	1.69E-31	33	128	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-17	34	83	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-18	35	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-24	36	88	IPR009057	Homeodomain-like
CDD	cd00167	7.39E-15	37	79	No hit	No description
SMART	SM00717	1.0E-14	86	134	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.247	87	136	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-22	89	135	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-14	89	131	IPR001005	SANT/Myb domain
CDD	cd00167	1.01E-10	89	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEAMNGCSSS TSSSDASSSD SYLSARGSNK AEKIKGPWSA EEDRILTRLV ERYGPRNWSL 60 ISRYIKGRSG KSCRLRWCNQ LSPNVEHRPF SQAEDDTILA AHARYGNRWA TIARLLPGRT 120 DNAVKNHWNS TLKRRAREGQ HHHQQQQQQE HQQQILRVTH QPMDGGDHCA LGSTEVMIEE 180 EALTALTLAP PGSGVSSRSA VVVAERRREE RVPAEFWDVM RDVIAREVRE YMSSTLSAET 240 SAFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-42	32	136	1	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394167	1e-133	GQ394167.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1132 SSR marker CGR6715 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017604994.1	0.0	PREDICTED: myb-related protein A-like
TrEMBL	A0A1U8HKQ5	1e-180	A0A1U8HKQ5_GOSHI; myb-related protein A-like
STRING	Gorai.009G208900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14553	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	7e-58	myb domain protein 73