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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_08370_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 27224.5 Da PI: 9.6641 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.2 | 2.5e-07 | 83 | 131 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ +h + Er RR++ +++++ L ++lP +K++K +i++ A+ +++L Cotton_A_08370_BGI-A2_v1.0 83 RCLKHMMKERIRREKQKKCYFALYSMLPLG-----TKNDKNSIVQTATMRVREL 131 577899***********************6.....6777777777777666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.04E-10 | 77 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.42E-5 | 80 | 125 | No hit | No description |
PROSITE profile | PS50888 | 11.896 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-5 | 83 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-7 | 86 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDELIKLLLG EHGTIWYETT PVLQPVRPSA FQPYPKTPRT EPWLEADGCN NGVRSGNINK 60 RLIEFLRKTN WVSVISKDEK KQRCLKHMMK ERIRREKQKK CYFALYSMLP LGTKNDKNSI 120 VQTATMRVRE LEMEREELQR NNNELLVNLG GNANNEGAKI RARIDDPSYE IDYMLAVLKC 180 LKTLDSKPGM IRTTVYNQEL VLDLATKMKA ADVENAINRT LQEVERKLEE RRSI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016729099.1 | 1e-171 | PREDICTED: transcription factor bHLH92-like | ||||
TrEMBL | A0A1U8MU57 | 1e-170 | A0A1U8MU57_GOSHI; transcription factor bHLH92-like | ||||
STRING | Gorai.005G046700.1 | 1e-151 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24448 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 6e-23 | bHLH family protein |