PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08293_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 524aa MW: 57612.9 Da PI: 8.6525

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08293_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cotton_A_08293_BGI-A2_v1.0 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	15.5	4.8e-05	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Cotton_A_08293_BGI-A2_v1.0 134 WKCDKCSKKYAVQSDWKAHQKTC 156 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.25E-8	57	80	No hit	No description
SMART	SM00355	0.017	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	58	80	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.4E-5	58	80	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	98	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.9E-5	122	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.25E-8	129	155	No hit	No description
SMART	SM00355	94	134	154	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSKISGDDGS LSSGNTGEEV HQLLLKNNFP PASVSNTNNP NAEVIALSPT TLMATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TTEVKKRVYI CPEPTCVHHN PARALGDLTG 120 IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK AHQKTCGTKE YKCDCGTIFS RRDSFITHRA 180 FCDAIAEENI KVNQGLMNNA GSNLQNQMPD LLMSSMPMCN DNTFMGISDF NNFDSKSTPL 240 KSLSQELVPM PFRSMNIGGG MFSSSSGTLF GTTRSISSAS SSLQLSSNGS SGFNYLQDTK 300 KGCQIAESPH MSATALLQKA AQMGATASNS INSPMMQTSF ASSMAGPYQA IRPPTFGGIQ 360 QQNISNYDQF PSQTDQSSMV GISEGFSNQL MQKSPNEFAQ LFQGSSAMNE MGMLTNMLIS 420 GVDRNQGLMK NVEHEGSGSS YNLLQRRKPT GPSIYGASSG GGNMTTLDFM GIGGSRPTNL 480 HEQQHLQQRL ELEAISQQRL PMMNPFQQQY SDGDSTIEKP IWDV

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSKISGDDGS LSSGNTGEEV HQLLLKNNFP PASVSNTNNP NAEVIALSPT TLMATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TTEVKKRVYI CPEPTCVHHN PARALGDLTG  120
IKKHFSRKHG EKKWKCDKCS KKYAVQSDWK AHQKTCGTKE YKCDCGTIFS RRDSFITHRA  180
FCDAIAEENI KVNQGLMNNA GSNLQNQMPD LLMSSMPMCN DNTFMGISDF NNFDSKSTPL  240
KSLSQELVPM PFRSMNIGGG MFSSSSGTLF GTTRSISSAS SSLQLSSNGS SGFNYLQDTK  300
KGCQIAESPH MSATALLQKA AQMGATASNS INSPMMQTSF ASSMAGPYQA IRPPTFGGIQ  360
QQNISNYDQF PSQTDQSSMV GISEGFSNQL MQKSPNEFAQ LFQGSSAMNE MGMLTNMLIS  420
GVDRNQGLMK NVEHEGSGSS YNLLQRRKPT GPSIYGASSG GGNMTTLDFM GIGGSRPTNL  480
HEQQHLQQRL ELEAISQQRL PMMNPFQQQY SDGDSTIEKP IWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-34	130	199	3	72	Zinc finger protein JACKDAW
5b3h_F	9e-34	130	199	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016708704.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-106	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U8L6D1	0.0	A0A1U8L6D1_GOSHI; protein indeterminate-domain 2-like
STRING	Gorai.007G130100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15443	8	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.2	1e-91	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]