PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08287_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 473aa    MW: 51264.4 Da    PI: 8.4968
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08287_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114975127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                ++ + C +++rtG+C yG+rC+++H++
  Cotton_A_08287_BGI-A2_v1.0 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75
                                57899********************96 PP
2zf-CCCH39.59.3e-1394120127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++ C+f+++tGtCk+G++CkF+H++
  Cotton_A_08287_BGI-A2_v1.0  94 PGEPTCQFYLKTGTCKFGASCKFHHPK 120
                                 57899********************96 PP
3zf-CCCH26.31.3e-08141166227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++C++++++G+Ck+  +CkF+H++
  Cotton_A_08287_BGI-A2_v1.0 141 GEKECSYYLKMGHCKFDTTCKFHHPQ 166
                                 7899********************97 PP
4zf-CCCH36.58.2e-12294320127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C++++rtG Ck+G++C+++H++
  Cotton_A_08287_BGI-A2_v1.0 294 PGEPECQYYLRTGDCKFGSSCRYHHPR 320
                                 5799*********************96 PP
5zf-CCCH33.85.6e-11343366427
                                 ---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                  +C+f++++G+Ck+G++CkF H++
  Cotton_A_08287_BGI-A2_v1.0 343 QPCSFYLQNGHCKFGSTCKFDHPM 366
                                 69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3144876IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-74875IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-65376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.02393121IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-693120IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-1095120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-599120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61139167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027139166IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5141167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817293321IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6293320IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9295320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6297324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4299320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99339367IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-6339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6342370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5343365IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8343366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MELYSRIQPR NGSQSGYQSE WSPAGPETGL EESMWPLSLG GTESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNPAWV EAAVRATGVY PERPGEPTCQ FYLKTGTCKF GASCKFHHPK  120
QGYQSFSQVP LNIYGYPLRP GEKECSYYLK MGHCKFDTTC KFHHPQSAGT SIPASASQFF  180
QPVQSPSVPI TEQYGGASTS ARPPILPGSY VQGAYGHVLF SPGVVPIPGW SHYSAPVSSV  240
VSPGVQPAVG ATSLYGLTQL SSSTPSRAGP YLSLPSSMSP SSGNQNNQTF PERPGEPECQ  300
YYLRTGDCKF GSSCRYHHPR DKVAPWTNCI LSPMGFPLRP GGQPCSFYLQ NGHCKFGSTC  360
KFDHPMGTMR YSPSVSSLID MPVAPYPVGS LLATLPPSST SSELRPELSS GSKKDSYLSR  420
IPSSSISSSS VGLIFSQTGS VPLSDLQHSS QNSVPLSSTR STRQGGEVHR QTD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6227901e-43JX622790.1 Gossypium hirsutum clone NBRI_GE69668 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628092.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8L8J30.0A0A1U8L8J3_GOSHI; zinc finger CCCH domain-containing protein 32-like isoform X4
STRINGGorai.007G130500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-179C3H family protein