PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08234_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 354aa    MW: 39709.9 Da    PI: 4.5575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08234_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.3e-06207246538
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-S CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkas......kapskKl 38 
                                 + +++r+RR ri +++  L+ellP++s      ++++ K+
  Cotton_A_08234_BGI-A2_v1.0 207 AAAIDRQRRLRIDESIKALQELLPSSSellnmnNNNDNKN 246
                                 5799*********************877887774444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.337202272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-8203282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-6204282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDGQPGHENP LMSLNSDGSV NEFPYDYVDD TNPVLLTPRG RNTNQPSLQS LSQWIDCPKT  60
PHSYVEFLTE NLEKLPTADV LESIGSPIGG IHAVDGVSEI QRELLHSNEG KAFSSGPDGY  120
SLEAGQWNLK LSAYPTEINN HEASASERFL SRNSSSEYEF HAQQNHASWM QKPEAEDCNV  180
SHLQSKETIS APSFQSQPQY HAPKSRAAAI DRQRRLRIDE SIKALQELLP SSSELLNMNN  240
NNDNKNNSIE GTMEERGLGN ALDDIIDYVK FLQLQVKELS RSRLGGEPTS NPFVFFEGYG  300
HYVLHEQMIN EPLEEMMAKL LEINPSAATQ LLESRGLYMM PRALVDDFCT ESHR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5892029e-93JX589202.1 Gossypium hirsutum clone NBRI_GE23854 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627900.10.0PREDICTED: transcription factor bHLH69
RefseqXP_017627901.10.0PREDICTED: transcription factor bHLH69
RefseqXP_017627902.10.0PREDICTED: transcription factor bHLH69
TrEMBLA0A1U8L5320.0A0A1U8L532_GOSHI; transcription factor bHLH7-like
STRINGGorai.007G135600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-14LJRHL1-like 1