PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08164_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 337aa    MW: 37710.8 Da    PI: 5.3145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08164_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19123173155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Cotton_A_08164_BGI-A2_v1.0 123 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 173
                                 59********.**********72....45*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-33123180No hitNo description
PROSITE profilePS5103223.841124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-30124181IPR001471AP2/ERF domain
SMARTSM003806.5E-39124187IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22124181IPR016177DNA-binding domain
PfamPF008471.4E-12124173IPR001471AP2/ERF domain
PRINTSPR003673.6E-10125136IPR001471AP2/ERF domain
PRINTSPR003673.6E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDHSPVPSIK YTEHRYQTKL LSPLLDVSLV NQPEMKRRIV RISVTDADAT DSSGDEDDDY  60
EGHASQLRCR NRVKKYVNEI TIESTLCPVQ NGRVSRSKTS LSKSSQKRPA MKVKATMKAP  120
ADKKFRGVRQ RPWGKWAAEI RDPLRRVRLW LGTYDTAEEA AMVYDNAAIK LRGPDALTNF  180
SNPKLQDKNS QKGLSSSDYH SGEESHNTNL CSPTSVLRCL SLSADEGDSQ SVKESRELRS  240
EPGAVVDDSC FTSGEKFSEF SDQSSLFPSD IFSSVPELFD DNTSFHDCLL RDDFSDGFLS  300
SGGDFEFGFG GFSRWQRVDD RFQDIGDLFG SDPLVAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20123180159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610083.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
RefseqXP_017610094.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2P5Y9H20.0A0A2P5Y9H2_GOSBA; Uncharacterized protein
STRINGGorai.006G208200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-51cytokinin response factor 2