PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_08002_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 336aa    MW: 37332.9 Da    PI: 7.1544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_08002_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08167214455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++  L+ l+P +     +K   Ka +L + ++Y++sLq
  Cotton_A_08002_BGI-A2_v1.0 167 SHSLAERVRRKKISERMKILQCLVPGC-----EKvTGKALMLDEIINYVQSLQ 214
                                 8*************************9.....67699***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-16161229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-9161218No hitNo description
PROSITE profilePS5088814.837163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-15163226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-6167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-8169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAAFSYVLDP NIFLQNMALT PKASCFMMDD GNLTSNCFSQ YYSPELFHDS LFDPNNHETS  60
CVDHCSKVVS QSDNEPSVGE KQSTGGGDST VVDKLEQGEQ VTQNVNPRNR KRKTRNGTTF  120
KTKDAKEGKA KEKKKCNNGK KGEKKSPEEP PSGYIHVRAR RGQATDSHSL AERVRRKKIS  180
ERMKILQCLV PGCEKVTGKA LMLDEIINYV QSLQNQVEFL SMKLASVSPM FYDFGVDLEA  240
LTVKPERVNS EASTTTPVLP CLQQCNPTQA SAFVDSTTAT FAPSNNYPFL GASHQDQTPI  300
LFSHPQDNGG VLWDVEDQRQ KFLNSSGLND NLCSFH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5908641e-134JX590864.1 Gossypium hirsutum clone NBRI_GE25866 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636647.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A1U8NFX30.0A0A1U8NFX3_GOSHI; transcription factor bHLH137-like
STRINGGorai.008G209900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-51bHLH family protein