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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_07916_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
C3H |
Protein Properties |
Length: 345aa MW: 37738.8 Da PI: 7.2698 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_07916_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 23.2 | 1.2e-07 | 82 | 106 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC f++ GtC++ +C+FaH+
Cotton_A_07916_BGI-A2_v1.0 82 FKTKLCGKFRA-GTCPFIKNCNFAHS 106
69*********.*************8 PP
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2 | zf-CCCH | 18.6 | 3.2e-06 | 156 | 181 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yk + C+ f+ C+yGd+C+F H+
Cotton_A_07916_BGI-A2_v1.0 156 YKGRHCKKFYTEEGCPYGDNCTFLHD 181
78888********************7 PP
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3 | zf-CCCH | 43 | 7.4e-14 | 227 | 252 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
Cotton_A_07916_BGI-A2_v1.0 227 WKTRICNKWELTGYCPFGNKCHFAHG 252
8************************9 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-14 | 79 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-7 | 79 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.037 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 82 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-9 | 153 | 183 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-7 | 154 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-16 | 221 | 256 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-10 | 223 | 257 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.525 | 226 | 254 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-9 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-11 | 227 | 252 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MDYSRENVVH VIPNSIDPSV WATEEDYRAW NNEETFNDAP SNFSYDQRQP QSRSNSDMPP 60 NKKSRNSQDL SSRSKAIGKM FFKTKLCGKF RAGTCPFIKN CNFAHSIEEL RRPPPNWQEI 120 VAAHEEEKGI LAEPREEFHI PSLGSNSFSG ETQRSYKGRH CKKFYTEEGC PYGDNCTFLH 180 DEQSKNRESV AISLGPGGYG GGGGGGGGGG AASGGCGSGS NIKPSNWKTR ICNKWELTGY 240 CPFGNKCHFA HGLAELHRHG GALGDTEAKD SFVAPFDSKQ AGGAPLKTPA DTMAASIPSV 300 PLSDLGVPSQ RTSIVLQKPG QTTPHNWKGP DKISRIYGDW IDDFE
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC243165 | 0.0 | AC243165.1 Gossypium hirsutum clone MX179E13-jom, complete sequence. |