PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07876_BGI-A2_v1.0
Common NameF383_27544
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 564aa    MW: 62359.1 Da    PI: 6.4272
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07876_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.52.7e-27317371156
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                 k +++Wtp LH++Fv+av+qL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Cotton_A_07876_BGI-A2_v1.0 317 KSKVDWTPALHKKFVQAVDQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                                 6799*****************.********************************96 PP
2Response_reg25.47.3e-10201261109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+ d++ + +  l++ le  +y +v ++ +  eal  +  +   +++ ++ i+  + +G+  +k +++++ +lp i+ +   
  Cotton_A_07876_BGI-A2_v1.0  20 VLLLDEDSNSAAELKSKLEAMDY-IVYTFCNENEALSAVSSRPesFHVAIVEINTNKKNGS--FKFLETAK-NLPTILTSNIH 98 
                                 789999999999***********.***************666666************9996..56666666.89999888888 PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                   +++ +++ +Ga +fl Kp ++e+l++
  Cotton_A_07876_BGI-A2_v1.0  99 CISTMMKCIALGAVEFLKKPLSEEKLRN 126
                                 8************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.68E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.1E-1516156No hitNo description
PROSITE profilePS5011019.82419132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.76E-721131No hitNo description
PROSITE profilePS5129415.046314373IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-27315374IPR009057Homeodomain-like
SuperFamilySSF466891.02E-17315374IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-25317371IPR006447Myb domain, plants
PfamPF002492.2E-6320369IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MICTTNDLSE WKDFPKGLKV LLLDEDSNSA AELKSKLEAM DYIVYTFCNE NEALSAVSSR  60
PESFHVAIVE INTNKKNGSF KFLETAKNLP TILTSNIHCI STMMKCIALG AVEFLKKPLS  120
EEKLRNIWQH VVRKAFNSVG TDLSESVKPV KESLVSMLYL QLENGEPKNK DLDKTQDASV  180
IHENDPEPST GSDKYPAPST PQLEQGGRLS ADGDCQDQAN CSIEKESSEQ DGESKSVETT  240
SDNTIAEVTI PVGQPLGPRD TMVTEEADLV DGTKGESTTY SQTENGVNSK NSQAVAEKPS  300
TVSGIHSSCL NKANRKKSKV DWTPALHKKF VQAVDQLGID QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HRKHILPKED NRRWPQRDQT QRSCYPHKPI IAFPPHYSNH DVPVGPLYPM  420
WGAPSSIQMW GSQGYPLWQP TESWHWKPYP GAHADAWGCP VMPPPHGYSS AFTQVSSYQN  480
ASVFHCSGTM DNRSGMPQNS VEHQPAEEVI DKVVKEAISK PWLPLPLGLK PPSTDTVLAD  540
LSKQGISTFP PHINGPNSSC HGTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-17317373157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636369.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
SwissprotQ6LA431e-143APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A0B0P6C00.0A0A0B0P6C0_GOSAR; Two-component response regulator-like APRR2
STRINGGorai.008G228800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-146ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]