PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07854_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 436aa MW: 48124.7 Da PI: 6.9522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07854_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	323	361	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Cotton_A_07854_BGI-A2_v1.0 323 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 361 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.458	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.06E-5	321	365	No hit	No description
SuperFamily	SSF47459	4.32E-11	321	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	325	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MEPENAHHQH HLQDQLLGSS SSSSLPISPC YGVSSTHSWT PTTVLNSSEF NPSCNGDILH 60 SRLKNDMLVS PQNSSMIQDW TNNEGSFTTH SCHGLHLPKI KDELSESITR FTDILSDSTS 120 SVIDSHHLPP PNYLKNNEQR DLSDLSQKLL LKTISSGFPM FSTGPEFYST TQNCSIPRNS 180 FLPSRGSFSQ IYPSINISSL NQASSSPNIP SSFDMNMEAL DLLNPARFSR SSRFSYPSED 240 HDNLGIYKEI SPSFGLHHHH NLQQSSQRPV AYTPSKTSPF PTEITEAKRP SILPETKPAA 300 PTTTTAKKSR LESRASCPPF KVRKEKLGDR IAALQQLVAP FGKTDTASVL MEAIGYIKFL 360 QNQVETLSVP YMKLSRNKTS KSRQGGSTME DESEEDEARP DLRSRGLCLV PLSCMSYMTS 420 DSGGGGIWPP PPNFTG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MEPENAHHQH HLQDQLLGSS SSSSLPISPC YGVSSTHSWT PTTVLNSSEF NPSCNGDILH  60
SRLKNDMLVS PQNSSMIQDW TNNEGSFTTH SCHGLHLPKI KDELSESITR FTDILSDSTS  120
SVIDSHHLPP PNYLKNNEQR DLSDLSQKLL LKTISSGFPM FSTGPEFYST TQNCSIPRNS  180
FLPSRGSFSQ IYPSINISSL NQASSSPNIP SSFDMNMEAL DLLNPARFSR SSRFSYPSED  240
HDNLGIYKEI SPSFGLHHHH NLQQSSQRPV AYTPSKTSPF PTEITEAKRP SILPETKPAA  300
PTTTTAKKSR LESRASCPPF KVRKEKLGDR IAALQQLVAP FGKTDTASVL MEAIGYIKFL  360
QNQVETLSVP YMKLSRNKTS KSRQGGSTME DESEEDEARP DLRSRGLCLV PLSCMSYMTS  420
DSGGGGIWPP PPNFTG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586635	1e-135	JX586635.1 Gossypium hirsutum clone NBRI_GE20500 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608933.1	0.0	PREDICTED: transcription factor bHLH110-like
TrEMBL	A0A1U8PCZ7	0.0	A0A1U8PCZ7_GOSHI; transcription factor bHLH110-like isoform X1
STRING	Gorai.009G199600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	8e-78	bHLH family protein