PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_07791_BGI-A2_v1.0 | ||||||||
Common Name | F383_16924 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 390aa MW: 42980.1 Da PI: 6.1261 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 203 | 250 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Cotton_A_07791_BGI-A2_v1.0 203 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 250 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-15 | 197 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.78E-8 | 197 | 254 | No hit | No description |
PROSITE profile | PS50888 | 14.373 | 199 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 201 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-6 | 203 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-8 | 205 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 390 aa Download sequence Send to blast |
MESKAGTTET RSNITASDGE QVAALESLQF TDEFHRLILA PTSDNATSLT ALLELPASRA 60 LELLHSPASA KLIAAPAPSF EALKGNFLFP SNTTLIDQAA RSSVFAGGVN NTNNKSNAPE 120 TTSNNSTLNL EKAVKSEPAE TESSQPLVSD PAVEKRNFKR KDHEKKAKGS TKKSKTAAND 180 SSVGPEKLPY VHVRARRGEA TDSHSLAERA RREKINARMK LLQELVPGCN KISGTALVLD 240 EIINHVQSLQ NQVEFLSMRL AAVNPRIDFN LNSIFTTEVR WELSYDYIPP EDFNSGSLPD 300 NKFPSMVMPL IWPEVQVNGN KQQHQQQWQF DALQQPVWGR EVCNNYITPE NSLLSYDSSA 360 NSATLHANQT ENGAMKSEEV PTVRLVERLL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610911.1 | 0.0 | PREDICTED: transcription factor bHLH48 isoform X1 | ||||
Swissprot | Q3EAI1 | 1e-85 | BH060_ARATH; Transcription factor bHLH60 | ||||
TrEMBL | A0A0B0MHT9 | 0.0 | A0A0B0MHT9_GOSAR; Transcription factor bHLH60-like protein | ||||
STRING | EOY09403 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57800.2 | 8e-86 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|