PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07788_BGI-A2_v1.0

Common Name

F383_32312

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 347aa MW: 38368.9 Da PI: 8.8577

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07788_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.8	8.3e-13	275	320	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Cotton_A_07788_BGI-A2_v1.0 275 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 320 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.11E-16	272	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-12	273	322	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-14	274	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-10	275	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-12	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MDSSTPPSCQ NQNSQPNSEL LRFLSAPNSL LATFSESLDT GLSKGGPHSD RLTYRFMNPS 60 QDKSGTEATI DHANSRRTFP GLPPHYPRQT SSAMDTSYLL LGMDPRCGKP VTSSLLRQSS 120 SPPGLFTNLF VQTGEIAGLG SYTNGELSPS SSSNRLKNQI SFSSRLPSSL GILSQISEVV 180 DDAKLETGCQ YGSWNDSANF PENFSGSKTT QDNDPNFFSA NQNSDSGSRF HVLSHHLSLP 240 KTSNETPAME KFLSFQDPVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD 300 KQTNTADMLD LAVDYIKDLQ KQFKTLNDRR ANCKCLNIQK PIPNQVL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MDSSTPPSCQ NQNSQPNSEL LRFLSAPNSL LATFSESLDT GLSKGGPHSD RLTYRFMNPS  60
QDKSGTEATI DHANSRRTFP GLPPHYPRQT SSAMDTSYLL LGMDPRCGKP VTSSLLRQSS  120
SPPGLFTNLF VQTGEIAGLG SYTNGELSPS SSSNRLKNQI SFSSRLPSSL GILSQISEVV  180
DDAKLETGCQ YGSWNDSANF PENFSGSKTT QDNDPNFFSA NQNSDSGSRF HVLSHHLSLP  240
KTSNETPAME KFLSFQDPVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD  300
KQTNTADMLD LAVDYIKDLQ KQFKTLNDRR ANCKCLNIQK PIPNQVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608660.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X3
Swissprot	Q66GR3	2e-99	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A0B0PGZ0	0.0	A0A0B0PGZ0_GOSAR; Transcription factor protein
STRING	Gorai.006G140200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-101	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]