PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_07771_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 312aa MW: 35971.5 Da PI: 8.1413

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07771_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.4e-32	143	197	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG ekAtPktil+lm+ +gLt+ hvkSHLQkYR+ Cotton_A_07771_BGI-A2_v1.0 143 KTRIRWTQDLHEKFVECVKRLGGCEKATPKTILKLMDTQGLTIFHVKSHLQKYRT 197 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-28	140	198	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.363	140	200	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-16	142	197	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-23	143	197	IPR006447	Myb domain, plants
Pfam	PF00249	7.0E-9	147	196	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-19	225	271	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MNTKRTDSQE LARQSLGFNR NCNLQPAMEG VPQQLNPGSS SSNPIMSGFQ TPAYAFYATE 60 RLDTSFCPQH NIYSSIESIA QDEPNYDFRN TLQSLVKSQI CFDQYQKSFE RSYKFPGSNA 120 KTHFSVPSRG NQDQRAYCNK SNKTRIRWTQ DLHEKFVECV KRLGGCEKAT PKTILKLMDT 180 QGLTIFHVKS HLQKYRTARY MPEFTQDCNL ITMYAMCRVF GSGLHLTEAL QLQLDVQRRL 240 NEQLEFQRNL QLRIEEQGRR LKMMIDEQQK TNENLLKNQG VDIKPYEHDP SFSDLDSSIA 300 ETSENVLTSG PC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-24	143	200	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-24	143	200	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-24	143	200	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-24	143	200	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-24	143	200	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609548.1	0.0	PREDICTED: myb family transcription factor PHL5
TrEMBL	A0A2P5WUB0	0.0	A0A2P5WUB0_GOSBA; Uncharacterized protein
STRING	Gorai.006G142000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24434	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-58	G2-like family protein