PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07705_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 477aa MW: 51962.9 Da PI: 7.2623

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07705_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.2e-15	300	345	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Cotton_A_07705_BGI-A2_v1.0 300 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 345 9**********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-18	292	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.815	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-18	300	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.91E-17	300	349	No hit	No description
Pfam	PF00010	3.3E-13	300	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-18	301	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MSQCVPSWDL DDNHVTARHS LRSNSNSTAP DVHMSDYEVA ELTWENGQLA MHGLGPASVP 60 AKPLVSNPPS KYTWDKPRAN GTLESIVNQA TRVPYLKVSL DGDRDELVPC LNQHREAAAS 120 SATMAMDALV PCSKRTEGRP SHAMESIPGL GRTCLVGGST RVGSCSGPAG THDDEVLVSG 180 KSTPAARAPE MPEWSSKEQS ASASATFGKD RDSRYVTLDT YEKDFGMGFT STSLGSPENA 240 SSTKPCTKAT TTADDHDSVC HSRPQAKFFP FNYREEFEED KKETGKSSVS NKRSRAAAIH 300 NQSERKRRDK INQRMKTLQK LVPNSSKTDK ASMLDEVIEY LKQLQAQVQM MNRMNIPQMM 360 LPMAMQQQLQ MSMMAPAMGM GMGMGMGMGM GVMDINTMGR PNITGISPVM PNPFMAMTSW 420 DGSGERLQQA ASAAAMMPDP LSTFLACQPQ PMTMDAYSRL AAMYQQMQQP PASGSKS

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MSQCVPSWDL DDNHVTARHS LRSNSNSTAP DVHMSDYEVA ELTWENGQLA MHGLGPASVP  60
AKPLVSNPPS KYTWDKPRAN GTLESIVNQA TRVPYLKVSL DGDRDELVPC LNQHREAAAS  120
SATMAMDALV PCSKRTEGRP SHAMESIPGL GRTCLVGGST RVGSCSGPAG THDDEVLVSG  180
KSTPAARAPE MPEWSSKEQS ASASATFGKD RDSRYVTLDT YEKDFGMGFT STSLGSPENA  240
SSTKPCTKAT TTADDHDSVC HSRPQAKFFP FNYREEFEED KKETGKSSVS NKRSRAAAIH  300
NQSERKRRDK INQRMKTLQK LVPNSSKTDK ASMLDEVIEY LKQLQAQVQM MNRMNIPQMM  360
LPMAMQQQLQ MSMMAPAMGM GMGMGMGMGM GVMDINTMGR PNITGISPVM PNPFMAMTSW  420
DGSGERLQQA ASAAAMMPDP LSTFLACQPQ PMTMDAYSRL AAMYQQMQQP PASGSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	308	ERKRRD
2	304	309	RKRRDK

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393293	1e-125	GQ393293.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0258 SSR marker CGR5167 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613140.1	0.0	PREDICTED: transcription factor UNE10 isoform X1
Swissprot	Q8GZ38	1e-111	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A0B0PSA1	0.0	A0A0B0PSA1_GOSAR; Transcription factor UNE10-like protein
STRING	Gorai.007G088300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3919	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-105	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]