PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 420aa MW: 45942.3 Da PI: 7.4854

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07701_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	7.9e-41	186	262	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +akeyhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk + Cotton_A_07701_BGI-A2_v1.0 186 RCQVEGCDVALVNAKEYHRRHKVCEMHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKGS 262 6*************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.1E-35	179	248	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.402	184	261	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-38	185	265	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-32	187	260	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MENGGSMFLG NKGQTGNNSI NLAWDLRELN PTSTRFEWGG NDNINAFDLY ASTTSTTSSS 60 RAEMISSPSS TLPVANTAAP ALMFLPHHVN ATLAHHLNQE HSLYAGDGSH MHPDPHLVCL 120 KLGKRHYFED STSLTERHLV GGFSIGKKGN PYYNNNIGCG SGSVSGGLEP SSPIAVMGSP 180 ASTVPRCQVE GCDVALVNAK EYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRFHVVSEF 240 DDSKRSCRRR LAGHNERRRK GSHDSASRNS AQDAKLMTGR FPYHLSLPKG RALSLLSSRA 300 DSWISPSDLS SRSSAALQEL IAENRAADLA RQVVLDRGWQ LNHRGMEDLG VFSSTMAEQH 360 SLLPAPPQGW EKFQETGAEL TLNLMQASSS ASGMFVRGKS EDEEQECSEL WNSLQGTHVV

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MENGGSMFLG NKGQTGNNSI NLAWDLRELN PTSTRFEWGG NDNINAFDLY ASTTSTTSSS  60
RAEMISSPSS TLPVANTAAP ALMFLPHHVN ATLAHHLNQE HSLYAGDGSH MHPDPHLVCL  120
KLGKRHYFED STSLTERHLV GGFSIGKKGN PYYNNNIGCG SGSVSGGLEP SSPIAVMGSP  180
ASTVPRCQVE GCDVALVNAK EYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRFHVVSEF  240
DDSKRSCRRR LAGHNERRRK GSHDSASRNS AQDAKLMTGR FPYHLSLPKG RALSLLSSRA  300
DSWISPSDLS SRSSAALQEL IAENRAADLA RQVVLDRGWQ LNHRGMEDLG VFSSTMAEQH  360
SLLPAPPQGW EKFQETGAEL TLNLMQASSS ASGMFVRGKS EDEEQECSEL WNSLQGTHVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	178	260	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622332	0.0	KJ622332.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL24) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614189.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
Swissprot	Q7XT42	5e-59	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A2P5XX69	0.0	A0A2P5XX69_GOSBA; Uncharacterized protein
STRING	Gorai.007G087900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15613	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	3e-36	squamosa promoter binding protein-like 10

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]