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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_07701_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
SBP |
Protein Properties |
Length: 420aa MW: 45942.3 Da PI: 7.4854 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_07701_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 130.1 | 7.9e-41 | 186 | 262 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
+CqvegC++ l +akeyhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk +
Cotton_A_07701_BGI-A2_v1.0 186 RCQVEGCDVALVNAKEYHRRHKVCEMHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKGS 262
6*************************************************************************976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MENGGSMFLG NKGQTGNNSI NLAWDLRELN PTSTRFEWGG NDNINAFDLY ASTTSTTSSS 60 RAEMISSPSS TLPVANTAAP ALMFLPHHVN ATLAHHLNQE HSLYAGDGSH MHPDPHLVCL 120 KLGKRHYFED STSLTERHLV GGFSIGKKGN PYYNNNIGCG SGSVSGGLEP SSPIAVMGSP 180 ASTVPRCQVE GCDVALVNAK EYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRFHVVSEF 240 DDSKRSCRRR LAGHNERRRK GSHDSASRNS AQDAKLMTGR FPYHLSLPKG RALSLLSSRA 300 DSWISPSDLS SRSSAALQEL IAENRAADLA RQVVLDRGWQ LNHRGMEDLG VFSSTMAEQH 360 SLLPAPPQGW EKFQETGAEL TLNLMQASSS ASGMFVRGKS EDEEQECSEL WNSLQGTHVV
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Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ622332 | 0.0 | KJ622332.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL24) mRNA, complete cds. |