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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_07550_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 198aa MW: 23234.6 Da PI: 9.6554 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_07550_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.6 | 9.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRrng+lKKA+EL vLCdaevaviifs++gklye+ss
Cotton_A_07550_BGI-A2_v1.0 9 KRIENATSRQVTFSKRRNGLLKKAYELYVLCDAEVAVIIFSHKGKLYEFSS 59
79***********************************************96 PP
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| 2 | K-box | 69.8 | 8.6e-24 | 84 | 171 | 10 | 97 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92
++ +++l+ e++++ k+ie L+ ++R++lG++L+s+s+ eLq++e+qLe+sl++iR++K l++eqi +l+ ke+ +qeen
Cotton_A_07550_BGI-A2_v1.0 84 FDRYTQQLRLEAENMAKKIEFLEVSKRRMLGQNLGSCSIDELQEVENQLERSLRNIRARKGYLFKEQILQLKAKERYMQEENA 166
5677899**************************************************************************** PP
K-box 93 aLrkk 97
+L++k
Cotton_A_07550_BGI-A2_v1.0 167 KLSAK 171
**987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009838 | Biological Process | abscission |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0080187 | Biological Process | floral organ senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MVRGKIQMKR IENATSRQVT FSKRRNGLLK KAYELYVLCD AEVAVIIFSH KGKLYEFSSS 60
DNMQNTIERY RQYKKDVQSN IPEFDRYTQQ LRLEAENMAK KIEFLEVSKR RMLGQNLGSC 120
SIDELQEVEN QLERSLRNIR ARKGYLFKEQ ILQLKAKERY MQEENAKLSA KNNGTTCSQQ 180
NAEVETELFL GLPENRCS
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
