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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_07511_BGI-A2_v1.0 |
| Common Name | F383_24251 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
NAC |
| Protein Properties |
Length: 248aa MW: 28197.1 Da PI: 9.0626 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_07511_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 117.6 | 1.2e-36 | 14 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83
+p GfrFhPtdeelvv+yLk+k+ +l++ +vi+e+d+++++Pw++p + +++ yfFs+r+ + + ++ +ra+ sgyW
Cotton_A_07511_BGI-A2_v1.0 14 MPIGFRFHPTDEELVVHYLKRKALCLPLPA-SVIPEFDVFQTDPWSMPGDM---KESKYFFSTRHDSFIN-NKCKRAAGSGYW 91
699***************************.99***************554...4567****99998765.7899999***** PP
NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
k gk+k++l++ ++++vg+++ ++f + + ++g++t+W++h+yrl
Cotton_A_07511_BGI-A2_v1.0 92 KPIGKEKPILASgTNQVVGMRRAFIFCQRKCSNGTQTRWLLHQYRL 137
**********9967778***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MESQNFVVNG GVKMPIGFRF HPTDEELVVH YLKRKALCLP LPASVIPEFD VFQTDPWSMP 60
GDMKESKYFF STRHDSFINN KCKRAAGSGY WKPIGKEKPI LASGTNQVVG MRRAFIFCQR 120
KCSNGTQTRW LLHQYRLVDS MPTLDSTQIS RSEMCGPDWL VFRVFQRKRS RRGKKHEVVS 180
HKSETSSAMN MPSCIDFTVE DSSVFGLPPQ PTSPSSTEIT EVSSHGLDQE ESSAFITSYY 240
SNGCMRNR
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 5e-32 | 12 | 170 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 6e-32 | 12 | 170 | 18 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 5e-32 | 12 | 170 | 15 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 5e-32 | 12 | 170 | 15 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX589385 | 8e-74 | JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence. |
