PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_07460_BGI-A2_v1.0

Common Name

F383_07105

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 924aa MW: 103877 Da PI: 5.6486

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07460_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.5	6.2e-05	697	757	1	54
TT--SS--HHHHHHHHHHHHHSSS--HHH..HHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaee..reeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt +++eq++++e++ ++ +++++ ++ A+kl ++t +q ++W Nr+a+ Cotton_A_07460_BGI-A2_v1.0 697 KRKRTIMNDEQVTIMERALLDEPEMQRNTtlIQSWADKLshhgsEVTCSQLRNWLNNRKAR 757 79****************9888876543399*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.75	694	761	IPR001356	Homeobox domain
SMART	SM00389	6.0E-4	696	765	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.9E-4	697	764	IPR009057	Homeodomain-like
CDD	cd00086	2.05E-4	697	760	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MRQGEGEAIS TVEQAIDLIS VVKEIHGLSS QELNKLLRDS ENFTIHFVTE KGLDVKIDVE 60 KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ 120 LIDLVFYVLI VLNDYRQDIH DSGPVPVLLS ALVACSFYLL TGCISSQWQD LALVMVAHPK 180 VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI CVKSSSTTES MVNYLCQQCE ASLQFLQLLC 240 QQKPFRERLL KNKELCGKGG ILFLAQSILK LHAPDFAESS AIVAALSRLK AKVLSILLHL 300 CEAESISYLD EVASSPASLD LAKSVAFEVL ELLKTGLSKN PKHLSASSDR TYPMGLLQLN 360 AMRLADIFSD DSNFRSYITV YFTEFLSAIF SLSHGDFLSM WCSADLPVRE EDATLYYEVF 420 AAAGWALDSV SSSDLSNTSN LEFTFIPNSN MSQASYVHQR TSLFVKIIAN LDCFIPNICE 480 EQERNLFLHK FLGCLLMDPS KLLPSYAFIT GPQKASAVQK NLRSLLSHAE SLIPTFLNME 540 DLQLLRVFFD NLQLLMNPSE FEENRVQDDR SLGGCSSPLL RREPPNLNNR NGNLKEEMSE 600 NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD KDKSITPSGL KEIDRDVQNV ETSGSDTSST 660 KGKNAVDKLA ERQRENADVR EDEKVETVQT EEKHRRKRKR TIMNDEQVTI MERALLDEPE 720 MQRNTTLIQS WADKLSHHGS EVTCSQLRNW LNNRKARLAR LSKDARPPPE PDNAFAGKQG 780 GPQQGHSLRA PDSPGQETTP SNTRGTRSMS RMNTSENPVA PEFVDYGAAE FVQCKPGQFI 840 VLVDGRGQEI GKGKVHQVQG KWWGKSLEES GSCVVDVVDL KADRWVKLPY PSESTGTSFE 900 DAEKKLGVMR VMWDSNKIFM LRPQ

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MRQGEGEAIS TVEQAIDLIS VVKEIHGLSS QELNKLLRDS ENFTIHFVTE KGLDVKIDVE  60
KLAGFLPLHL IAVLVSSDRD EALLRYLLCG IRILHSLCEL APRHTKLEQI LLDDVKVSEQ  120
LIDLVFYVLI VLNDYRQDIH DSGPVPVLLS ALVACSFYLL TGCISSQWQD LALVMVAHPK  180
VDMFMDVACR AIHLVVRFLQ NKLSVQHIEI CVKSSSTTES MVNYLCQQCE ASLQFLQLLC  240
QQKPFRERLL KNKELCGKGG ILFLAQSILK LHAPDFAESS AIVAALSRLK AKVLSILLHL  300
CEAESISYLD EVASSPASLD LAKSVAFEVL ELLKTGLSKN PKHLSASSDR TYPMGLLQLN  360
AMRLADIFSD DSNFRSYITV YFTEFLSAIF SLSHGDFLSM WCSADLPVRE EDATLYYEVF  420
AAAGWALDSV SSSDLSNTSN LEFTFIPNSN MSQASYVHQR TSLFVKIIAN LDCFIPNICE  480
EQERNLFLHK FLGCLLMDPS KLLPSYAFIT GPQKASAVQK NLRSLLSHAE SLIPTFLNME  540
DLQLLRVFFD NLQLLMNPSE FEENRVQDDR SLGGCSSPLL RREPPNLNNR NGNLKEEMSE  600
NSAFQEEHFY VRNSHMDQAD GVTRRDMMDD KDKSITPSGL KEIDRDVQNV ETSGSDTSST  660
KGKNAVDKLA ERQRENADVR EDEKVETVQT EEKHRRKRKR TIMNDEQVTI MERALLDEPE  720
MQRNTTLIQS WADKLSHHGS EVTCSQLRNW LNNRKARLAR LSKDARPPPE PDNAFAGKQG  780
GPQQGHSLRA PDSPGQETTP SNTRGTRSMS RMNTSENPVA PEFVDYGAAE FVQCKPGQFI  840
VLVDGRGQEI GKGKVHQVQG KWWGKSLEES GSCVVDVVDL KADRWVKLPY PSESTGTSFE  900
DAEKKLGVMR VMWDSNKIFM LRPQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	694	699	RRKRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649531.1	0.0	PREDICTED: nodulin homeobox
Refseq	XP_017649532.1	0.0	PREDICTED: nodulin homeobox
TrEMBL	A0A0B0PN29	0.0	A0A0B0PN29_GOSAR; Uncharacterized protein
STRING	Gorai.009G451700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8179	6	7