PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07313_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 270aa    MW: 29221.3 Da    PI: 6.7913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07313_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000197698123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C + F++   L  H+++H
  Cotton_A_07313_BGI-A2_v1.0 76 YSCSFCRREFRSAQALGGHMNVH 98
                                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-673103No hitNo description
SMARTSM003550.00987698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.21976103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAAELDLLSS TQLQKLAQSQ QNHNHHQPDT NLATVGSLMW YPKGHSHEVD DDSWEVRAFA  60
EDTGNVMGTT WPPRSYSCSF CRREFRSAQA LGGHMNVHRR DRARLHQAHP AGGGGGGGNG  120
ALNNPTSPSS PSTTSSSTLL IPTQEFVTNG GLCLLYQLHN PSDGVLTSSP PMDAWPIDSS  180
STLLSVSPYP SYNFMAVTAA TQSPINFPVT PPVLNSSPSS SFCYSTKAVH SRTRGDNNNL  240
NQGLNISNKE IPIEELDLEL RLGHKRPTTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-137198229superman protein
2l1o_A6e-137198229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3935261e-117GQ393526.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0491 SSR marker CGR5518 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610425.10.0PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1U8M8T30.0A0A1U8M8T3_GOSHI; transcriptional regulator SUPERMAN-like
STRINGGorai.006G216400.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-36C2H2 family protein