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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_07124_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 350aa MW: 40724.4 Da PI: 6.57 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_07124_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 179.6 | 8.1e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80
+ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+y++ePwdL++ ++ a e++ewyfFs++dkky+tg+r+nratk+
Cotton_A_07124_BGI-A2_v1.0 7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYRIEPWDLQElcRIGAeEQNEWYFFSHKDKKYPTGTRTNRATKA 88
69****************************.9***************954555442556************************ PP
NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
g+Wkatg+dk++++ ++ l+g++ktLvfykgrap+g+k+dW+mheyrle
Cotton_A_07124_BGI-A2_v1.0 89 GFWKATGRDKAIYC-RHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
**************.999*****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MNNFTNVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYRIEPW DLQELCRIGA 60 EEQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YCRHCLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VQKVGEYDSS CWYDEQISFM 180 QDFESPRRIP QPYASYPHQY PCKQELQLQH SFPHDPFLQL PQLESPRLPQ SVASVSCNSV 240 VPYGSNLQSS SLSQEEHMQQ GHHQQNLNSL YNNGEQAVDQ VTDWRVLDKF VASQLSHEEA 300 SKENNYSNAA ASFHVGEQMD LLGDESKRPG IAHQEYTSTS NSSCQIDLWK
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |