PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_07105_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 774aa MW: 84805.4 Da PI: 5.8467

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07105_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	334	2.8e-102	412	773	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 ++L+++Ae v +g+++ aq +Larl++++sp g p+qR+a+yf+eAL+ l+ ++ ++ pp++ + +++ ++ a+k+f Cotton_A_07105_BGI-A2_v1.0 412 LDQLYKAAELVGTGNFSHAQLILARLNHQVSPVGMPLQRAAFYFKEALQVLLLM--NNPVSPPPPRSPTAFDVIFKMGAYKVF 492 679***********************************************98..5556677777777789******* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167 sevsP+++f ++t+NqaIlea++ +r+Hi+Dfdi+ G+QW++++q+L R++g+pslRiT+++sp+++++ el +++ L + Cotton_A_07105_BGI-A2_v1.0 493 SEVSPLIQFVNFTCNQAILEALDDTDRIHIVDFDIGFGAQWASFMQELPMRSRGAPSLRITAFASPSTHHSIELGLMRDILMQ 575 ******************************************************************************* PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247 fA+e+g++fe +v+ ++l++ ++++L + + +Ea+aVn+ + + +++ + ++++++vk+lsPk+vv +q +d Cotton_A_07105_BGI-A2_v1.0 576 FANEIGLSFELEVVNFDSLDQ-NPHSLPMFQsngNEAIAVNFPV--WSCSNRPSA----LPHLMRFVKQLSPKIVVSLDQGCD 651 *********86666555.566665555556****99..444434444....456***************** PP GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 +n+ +F +++++a++ y+ l++sl+a+ ++s++ +k+Er+l+ ++i++ v + e++ W+ +++aGF+pv++s Cotton_A_07105_BGI-A2_v1.0 652 RNDLTFPQHVIHAFQSYTNLLESLDAG-NATSDAVNKIERFLFVPRIESSVLGHLQT----PEKMPLWSTLFSSAGFTPVTFS 729 ********************999.799****************998887....9***************** PP GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++qa++++++ +++g++ve++++slvl+W++r+L+s+SaWr Cotton_A_07105_BGI-A2_v1.0 730 NFTETQADCVVKRAQVRGFHVEKRQASLVLCWQQRNLISASAWR 773 *****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.392	385	753	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-100	412	773	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MHFELQAKGA VELPGFASIC QQNKWIKQRE ANSFNFGNGF YYNNEPEPTS VLHLRRSQSP 60 PTSASTLSSF NGGATGSGGG VNSTGNTNTT AATIAPPETT APNNNSKEEW ASELQPIPSE 120 LDLVPGPGGA QRCNSGLEDW ETMLSESAVS LNQDHSLLRW IAGEVDDPSF GLKQLLQSGS 180 SGPNQGVDFE GNAGVGAVDQ GPVSDPIGSL ISSSSGNGIS NAALNLGGLP GSGFVPNANN 240 ENEPSCSSVE LVNNSKVLGA TVGSNCNIQN PLFSSPASNF GFPVSLPILY QQQHQEEKPR 300 IFIGPQQHPQ YPNFFLPLAQ EHHLFQPLPQ RLNSGNLELS SQIPKLPFAD PGHELFTRKQ 360 QQQHMGFSQG VQYVPQQQPL MVEKKRVLVP GEEMAQPQHQ YQLHQQQQAT LLDQLYKAAE 420 LVGTGNFSHA QLILARLNHQ VSPVGMPLQR AAFYFKEALQ VLLLMNNPVS PPPPRSPTAF 480 DVIFKMGAYK VFSEVSPLIQ FVNFTCNQAI LEALDDTDRI HIVDFDIGFG AQWASFMQEL 540 PMRSRGAPSL RITAFASPST HHSIELGLMR DILMQFANEI GLSFELEVVN FDSLDQNPHS 600 LPMFQSNGNE AIAVNFPVWS CSNRPSALPH LMRFVKQLSP KIVVSLDQGC DRNDLTFPQH 660 VIHAFQSYTN LLESLDAGNA TSDAVNKIER FLFVPRIESS VLGHLQTPEK MPLWSTLFSS 720 AGFTPVTFSN FTETQADCVV KRAQVRGFHV EKRQASLVLC WQQRNLISAS AWRC

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MHFELQAKGA VELPGFASIC QQNKWIKQRE ANSFNFGNGF YYNNEPEPTS VLHLRRSQSP  60
PTSASTLSSF NGGATGSGGG VNSTGNTNTT AATIAPPETT APNNNSKEEW ASELQPIPSE  120
LDLVPGPGGA QRCNSGLEDW ETMLSESAVS LNQDHSLLRW IAGEVDDPSF GLKQLLQSGS  180
SGPNQGVDFE GNAGVGAVDQ GPVSDPIGSL ISSSSGNGIS NAALNLGGLP GSGFVPNANN  240
ENEPSCSSVE LVNNSKVLGA TVGSNCNIQN PLFSSPASNF GFPVSLPILY QQQHQEEKPR  300
IFIGPQQHPQ YPNFFLPLAQ EHHLFQPLPQ RLNSGNLELS SQIPKLPFAD PGHELFTRKQ  360
QQQHMGFSQG VQYVPQQQPL MVEKKRVLVP GEEMAQPQHQ YQLHQQQQAT LLDQLYKAAE  420
LVGTGNFSHA QLILARLNHQ VSPVGMPLQR AAFYFKEALQ VLLLMNNPVS PPPPRSPTAF  480
DVIFKMGAYK VFSEVSPLIQ FVNFTCNQAI LEALDDTDRI HIVDFDIGFG AQWASFMQEL  540
PMRSRGAPSL RITAFASPST HHSIELGLMR DILMQFANEI GLSFELEVVN FDSLDQNPHS  600
LPMFQSNGNE AIAVNFPVWS CSNRPSALPH LMRFVKQLSP KIVVSLDQGC DRNDLTFPQH  660
VIHAFQSYTN LLESLDAGNA TSDAVNKIER FLFVPRIESS VLGHLQTPEK MPLWSTLFSS  720
AGFTPVTFSN FTETQADCVV KRAQVRGFHV EKRQASLVLC WQQRNLISAS AWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-35	434	773	26	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638390.1	0.0	PREDICTED: scarecrow-like protein 22 isoform X1
TrEMBL	A0A0D2RL86	0.0	A0A0D2RL86_GOSRA; Uncharacterized protein
STRING	Gorai.008G238300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16534	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-109	GRAS family protein