PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07025_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 483aa    MW: 53374.3 Da    PI: 6.7101
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07025_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-17152201155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cotton_A_07025_BGI-A2_v1.0 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 201
                                 78*******************......55************************997 PP
2AP241.24.2e-13244294155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Cotton_A_07025_BGI-A2_v1.0 244 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 294
                                 89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16152210IPR016177DNA-binding domain
PfamPF008473.9E-9152201IPR001471AP2/ERF domain
SMARTSM003806.4E-32153215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-17153210IPR001471AP2/ERF domain
CDDcd000188.15E-24153208No hitNo description
PROSITE profilePS5103217.754153209IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16244302IPR016177DNA-binding domain
PfamPF008471.3E-8244294IPR001471AP2/ERF domain
CDDcd000182.45E-25244302No hitNo description
SMARTSM003805.2E-32245308IPR001471AP2/ERF domain
PROSITE profilePS5103215.527245302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15245302IPR001471AP2/ERF domain
PRINTSPR003679.2E-6246257IPR001471AP2/ERF domain
PRINTSPR003679.2E-6284304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MLDLNLNVAS TQDSACVTLV TNKLKEYCGN QMDESETSNS SIVNDDDESC STRANGDAFT  60
LSFDILKVGS GETEYGNDDA PVVVTKELFP VKRVGEDFRS PEGQSSGSSN YNKWIDLSFE  120
RKEVADPRVM QQQQPSQMTV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHSAAR AYDRAAIKFR GVDADINFSL SDYEDDMKQM KNLTKEEFVH ILRRQSTGFS  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI KCNGREAVTN  300
FEPRSYEGDI ILDTSNEGNT HNLDLNLGIS PPVGNGSVGN EEHPHFHSGT FDINGGKSLR  360
AENPAAATVG PAYKGLAGTS DQPILWSSVY PRCFPSEERA MVRRVDIGPP QGPPNWTCQM  420
RSQFSATATP LFSTAASSGF SYLAITPAAP KPINQMTQNL CFTSSTATAT NTAEINFQMQ  480
PPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844371e-130KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604000.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-119RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U8PH550.0A0A1U8PH55_GOSHI; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGGorai.009G104200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-136related to AP2.7