PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06966_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 859aa    MW: 96284.8 Da    PI: 8.5406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06966_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07614664148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                 r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++l
  Cotton_A_06966_BGI-A2_v1.0 614 RRPFSIAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTLL 664
                                 567888899*****************9988889**************9986 PP
2GRAS106.92.7e-33707855226374
                        GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                                 + L   +s+  ++++    + ++n + F +rf ea+ ++sa+fd lea+++ e+ +r  +E+e +gr++ nv+a eg +r++r
  Cotton_A_06966_BGI-A2_v1.0 707 SCLPHYNSTMIDLFIQGVVNGNYNFPFFINRFREAFFHFSAMFDILEANVGGEDPDRLLLEKETFGRDAINVIAYEGMDRINR 789
                                 5566666666666677777899************************************************************* PP

                        GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  e++++W+ r ++aGF+++pl++++ + a+++l+  + + + +e + +++++gWk+r + ++S+W+
  Cotton_A_06966_BGI-A2_v1.0 790 PEKYKQWQLRNQKAGFRQLPLEQNILNRARTVLKSDYHKDFDIEVDGQWMLQGWKGRVIHALSCWK 855
                                 ***********************************99888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.54E-6390481IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.922609668IPR017930Myb domain
SMARTSM007174.1E-6613666IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10614665IPR009057Homeodomain-like
SuperFamilySSF466893.86E-15615696IPR009057Homeodomain-like
CDDcd116608.27E-17615665No hitNo description
PfamPF035149.5E-31707855IPR005202Transcription factor GRAS
PROSITE profilePS5098515.04726835IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPAIP RATRSARKRV PFRKRVEGNQ TSAFDLLATV AGTLLLDKES  60
SPASNNSWNA EDQSAVEKNN VKEERQDGDQ SLKLETCNVS ELVPQTNDPN YSSRESRSLQ  120
NGNQFGVTSA LTTSECFERL DSQKLINGKI KNEMGSLACK VETGPFVSRT PGDCVEPVSE  180
NKVLTDEELD RTNKASTGEV ADKCPLEDPL VLDGKPPAVV SSDSSIKAPS FGEHDPFISF  240
PVQQYDVNVV SRDDDEKSSG CTHPSPIREP FRSTPRIGDR RIRKILASRY WKVALRSKNA  300
TYSNYDENLK SGYCNRSTYK RLRSGRNFPF KKRKFLHYTS ESNSDGGTIS EGISDLPEKN  360
INGKASILYS KMHGVTGESS SLADQRKSFN SRDPHVKLRI KSFRVPELFI EIPESATVGS  420
LKRTVKEAVT AILGGGLCVG VLLQGKKVRD DNKTLLQTGI SRDNQMDALG FSLEPNPSHA  480
SPSLCPGGSP LTLPHDIPLP LASLGEEANF LSDNSILIHE AAWFKCMELV SPGKLYLANP  540
GLVNQVTCHP STEPCIPNAG NFIESNNDCT ADMFDKSTTE SKALVAVPAM SVETLAVPVH  600
KKSKQSEVAQ RRIRRPFSIA EVEALVQAVE KLGTGRWRDV KLRAFDNAKH RTYVDLKDKW  660
KTLLHTARIS LQQRRGEPVP QELLDRVLNA HTYWSQQQAK QQQLPESCLP HYNSTMIDLF  720
IQGVVNGNYN FPFFINRFRE AFFHFSAMFD ILEANVGGED PDRLLLEKET FGRDAINVIA  780
YEGMDRINRP EKYKQWQLRN QKAGFRQLPL EQNILNRART VLKSDYHKDF DIEVDGQWML  840
QGWKGRVIHA LSCWKPVKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-545987091112Telomere binding protein TBP1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606986.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_017606987.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_017606988.10.0PREDICTED: telomere repeat-binding protein 5-like
TrEMBLA0A0B0P5Q60.0A0A0B0P5Q6_GOSAR; Telomere repeat-binding 5-like protein
STRINGGorai.009G098300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-140TRF-like 2