PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_06965_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 654aa    MW: 73630.4 Da    PI: 6.9173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_06965_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3811.5e-1162776463374
                        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                 +lL++cA+ v+ +d++ a++lL+++s+++s +gd +qRla+yf +AL++rla+++   y  l +++ts    +++l+a+ +++
  Cotton_A_06965_BGI-A2_v1.0 277 SLLIQCAQSVAINDQRTANELLKQISQHSSDSGDGTQRLAHYFGNALKTRLAGKGAPSYLHLGSNKTS---AADVLKAYGVYV 356
                                 79***************************************************888888888777776...89********** PP

                        GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  ++P+ k+s++ aN+ I+e +e ++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL+
  Cotton_A_06965_BGI-A2_v1.0 357 LACPFKKMSNFCANKKIMEVAEMATTLHIVDFGICYGFQWPCLIQRLSARAGGPPKLRITGIEFPQPGfrPAERVEETGRRLK 439
                                 *******************************************************************9*************** PP

                        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                 +++e+++vpfe+nv +ak++e+++leeL+++ +E+++Vn++++l++l+d++++ +s+rd+vLkl+ks++P ++++   +  +n
  Cotton_A_06965_BGI-A2_v1.0 440 RYCERFNVPFEYNV-IAKKWETIQLEELKINYDEVVVVNCMYRLKNLPDDTMAPTSARDTVLKLIKSINPAIFIHGVANGTYN 521
                                 *************9.7******************************************************************* PP

                        GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                 ++ F++rf eal ++sa fd +ea++ re+ er+++E+e+lgr+++nvvaceg+er+er et+++W+++  +aGFk++pl+++
  Cotton_A_06965_BGI-A2_v1.0 522 APFFVTRFREALFHFSAQFDIFEANVCREDAERMMYEKEVLGRDVMNVVACEGSERVERPETYKQWQAKTLRAGFKQAPLEQE 604
                                 *********************************************************************************** PP

                        GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  +k+++++++  + + + v+ +  ++++gWk+r ++++S+W+
  Cotton_A_06965_BGI-A2_v1.0 605 LMKKVRSMVQCNYHRDFAVDVDGRWMLQGWKGRVIYALSFWK 646
                                 *************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.967249626IPR005202Transcription factor GRAS
PfamPF035145.1E-114277646IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MDTLFQDFPR FNFDNGSEPT YTNHNLVNGF KEGSPESPDG YASSSGSCVQ GHPLDNIPFA  60
NEMLKYINEM LMEEDLQEKS CMLQDCLALQ AAEKSFYEVL GHQYPLSLHP ISPFPDDNLA  120
QTSDSYNITG TNSVKLSSGM YGSLERTSLS EPFTESPHSG DKVLLPPQSS LSSPCVPDGR  180
YKSPLSSKGR KNYQREDGDY LEEGRISKQS ATSLEDSEQS DIFDEVLLCK GENEVSPKFS  240
LNGNSPKNGQ LKGSINGGTG SRRKKSSKRS EVVDLWSLLI QCAQSVAIND QRTANELLKQ  300
ISQHSSDSGD GTQRLAHYFG NALKTRLAGK GAPSYLHLGS NKTSAADVLK AYGVYVLACP  360
FKKMSNFCAN KKIMEVAEMA TTLHIVDFGI CYGFQWPCLI QRLSARAGGP PKLRITGIEF  420
PQPGFRPAER VEETGRRLKR YCERFNVPFE YNVIAKKWET IQLEELKINY DEVVVVNCMY  480
RLKNLPDDTM APTSARDTVL KLIKSINPAI FIHGVANGTY NAPFFVTRFR EALFHFSAQF  540
DIFEANVCRE DAERMMYEKE VLGRDVMNVV ACEGSERVER PETYKQWQAK TLRAGFKQAP  600
LEQELMKKVR SMVQCNYHRD FAVDVDGRWM LQGWKGRVIY ALSFWKPVKN DPYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-482796468375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605595.10.0PREDICTED: scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A1U8J5530.0A0A1U8J553_GOSHI; scarecrow-like protein 33
STRINGGorai.009G098100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein